Corynebacterium diphtheriae 241: CD241_1714
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Entry
CD241_1714 CDS
T01687
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdp
Corynebacterium diphtheriae 241
Pathway
cdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD241_1714 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdp03019
]
CD241_1714 (rne)
03009 Ribosome biogenesis [BR:
cdp03009
]
CD241_1714 (rne)
Enzymes [BR:
cdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CD241_1714 (rne)
Messenger RNA biogenesis [BR:
cdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD241_1714 (rne)
Ribosome biogenesis [BR:
cdp03009
]
Prokaryotic type
rRNA processing factors
CD241_1714 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Fy-3
Motif
Other DBs
NCBI-ProteinID:
AEX44771
LinkDB
All DBs
Position
complement(1805839..1808751)
Genome browser
AA seq
970 aa
AA seq
DB search
MAEKSKKTTKNQAVSSPIGQAVAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRHRVEKNVENEIAQIEAKVNRDLEEAAANG
HGVVDSEEEKLRYRVEKNVDNEVEQIKQQVERELSQRSAEVEDLHEVIELEKEAEPLEDV
EPESAPAPASVSYSVPLFIAPTVVDDELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSAEIVEAEDVDEHESEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEA
EFLARRESVTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRV
QNVLPSMEAAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPI
GHKGARLTTQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTA
AENVSAEAIGADVNRLHKLWDKIQQCTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDF
TSLVIDGDRAWNTVHAYVQSVAPDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKV
WLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGM
IVVDFIDMVLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFAT
ECPHCEGRGVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAAAMHEEKKKV
SIEDLVAAVVIEDDPQPEPDVVPTPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEK
PQTYAEAVEEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPQPEPEVVVEKVSSRGRRRA
VRRTVVEATPEVVAPTETVESSRGRRRAVRKKMAPQPVQTEAVVEDKHEVSAPSQGGRGR
RRASRRAPRR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gcggtagctgcattggatcgctcgattatcggcgaaaaaatccgtgtgcatattctggcc
aagcaactaggtgttgcatctaaagagctcattgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaggctaatcagctgctcgactcttttgtt
ccagcgcaaccggaagtagatgagaagttgcgccaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacctagaagaagcggcggcgaacggg
catggtgtagtggattctgaggaggagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcagcaggttgagcgcgagctaagtcagcgttcggcggag
gtagaggatctccacgaggttatcgagctcgaaaaagaagcggagccgctcgaggacgtt
gagccggaatctgcacctgcgccagcgagcgtgtcctatagtgttccgctgtttatcgcg
cccacggtcgttgatgatgagctcgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggtcgtcgtggggctggtcgt
ggcaagggtgcagatgactcagctgagattgttgaagcagaagatgttgacgagcacgaa
tccgaagaaatcaccgagccagtaggtattaaaggctcaactcgtttggaagcacagcgg
cgtcgccgcgcggagctgcgtgaagagtcgaaaaagaagcgccacatcgtttctgaggcc
gagttcctagcgcgtcgcgaatctgttacgcgcacgatggtggtacgtgagcgcgatcgt
gtagaccaccatggcatggtgactcaggtgggcgtgctcgaagacggcatgcttgttgag
cactttgttaccagtgaggcccaagcctcgatgatcggcaacatctatcttggtcgcgtg
caaaacgtcctgcccagcatggaagctgccttcatcgacatcggaaagggccgcaacggt
gtgctttacgcgggcgaggtggactggcgtgccgcaggccttggtgggcgaggtcgtcgt
atcgagcaagccctgaaatccggtgaccaggtcctcgtccaggttgctaaagatcctatt
gggcacaagggtgctcgccttaccacccagatttctttcgcgggacgctacttggtgtac
gttcctggtggacgcactgcagggatttcccgcaagctcccagctcctgagcgtaagcgt
ttgaaggaaatcctcaaggaggtcgtgcctcacgacggcggtgccatcatccgaactgcc
gccgaaaacgtttctgcagaggcgatcggtgcagacgtcaaccgtttgcacaagctctgg
gataagatccagcagtgcaccgaggaagaaaaagcttccaagggtgccaagccggtgacc
atgtatgaagagcccaacatgctcgtcaaagtggtgcgtgatctcttcaatgaggatttc
acctccttggttatcgatggtgatcgtgcatggaacacggttcacgcgtatgtgcagtcg
gttgccccagacttgttgggccgcttggtgcgttttgatcgcagcgagcatgagggacgt
gacgccttcgaggtgcaccgcgtcaacgagcagattaaaaaggcactgtcacgaaaggtt
tggctgccatccggtggcaccttggtgatcgaccgcaccgaagccatgacggtgatcgac
gtgaacaccggcaagttcactggtgcaggtggaaaccttgaagaaactgtcaccaagaac
aaccttgaggctgcagaagagatcgttcgccagatgcgtctgcgcgacttgggtggcatg
atcgtcgtcgacttcatcgacatggtcttgcctgaaaaccaagacttggtcttgcggcgc
ctcaccgaagcgctaggacgcgaccggacgcgccaccaagtatccgaggtgacgtcgtta
ggcctcgtccagatgacccgcaaacgcttgggcactgggttgcttgaaacgtttgctacc
gaatgcccacactgtgaaggccgcggcgtgatcatccacgacgatcccgtcgagcagcga
gatgccgatgtggcaatggaaaagtctcatcgtgctcgcaatgagcgcaagaagaacaag
aaccacaccccatccgagcatccggctgcagctgctatgcatgaggaaaagaagaaggtc
agtatcgaagacctcgtcgccgcagtggttattgaggacgatccgcagccggaacctgac
gtagtgccaacacctgccgatgacgacgtgatggacatcgttagcgctgcgttggatcgt
gcttatgaggaagatcctgacgagccctccggatctgactatctgccgctagaagaaaag
ccgcagacctatgccgaggcagtggaagaatttgagcgttctccacgccgtaagcgtaag
acccgtggcaattccgtctccgatgtgccgccgcgcaaggcagattttgaaaagccagaa
ccgcaaccggaacctgaggttgtcgtggagaaagtaagctcacgtggtcgtcgtcgagct
gtgcgacgcacggtagtggaggctacccccgaggtggtagcgccaacggaaactgttgaa
tcctcccgcggtcgccgtcgcgctgttcgtaagaaaatggctcctcagccagtgcaaacg
gaggctgtagtggaagacaaacatgaggtttctgcaccatctcagggtggtcggggacgc
cgtcgtgcttcacgacgtgcaccgcgccgttaa
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