Corynebacterium diphtheriae HC03: CDHC03_0922
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Entry
CDHC03_0922 CDS
T01695
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdr
Corynebacterium diphtheriae HC03
Pathway
cdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDHC03_0922 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdr03019
]
CDHC03_0922 (deaD)
03009 Ribosome biogenesis [BR:
cdr03009
]
CDHC03_0922 (deaD)
Enzymes [BR:
cdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDHC03_0922 (deaD)
Messenger RNA biogenesis [BR:
cdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDHC03_0922 (deaD)
Ribosome biogenesis [BR:
cdr03009
]
Prokaryotic type
rRNA helicases
CDHC03_0922 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
AEX78653
LinkDB
All DBs
Position
956188..958236
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AA seq
682 aa
AA seq
DB search
MSITDNATSGENELDIKILSESQDNSQVDEGTTINNDVAADVDDSRVANTSEATDSAQQE
ADSAEKDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAA
FALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQL
SGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPE
DKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRI
LEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL
VATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS
IERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLIKSYAEEHDVPLE
DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRDRGSRFE
RNDDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDPSV
IDRLSDTRISGQLIHIEKDNGRPPRRNDDGDRGGYRGGDRFDRDDRRGGRGGRDRGGYRG
GRDRNDRGDRGGYRGGRGGYRD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccagcggcgagaacgagctggacattaagattttgtcg
gaatctcaggataattcgcaggtagacgaaggcaccaccatcaataatgatgtcgctgcc
gatgtagacgactccagggttgcgaacacttctgaggccaccgactccgctcagcaagaa
gcggacagtgcagaaaaagatggattcgaggctctaggtctcccagacgcaatcctgaag
gcagtcgctaaggttggcttcgaaacgccatccccaattcaggcgcagaccattccggtg
ttgatgcaggggcatgacgttatgggcctcgcgcagacgggtacaggtaagacggcagca
ttcgcgttgccaatcttgtcgcgtatcgacgtcaagaagcgccacccacaggcgttgatc
ctcgccccaactcgcgaacttgctttgcaggttgcagactccttccagtccttcgcagat
catttgggtgacatccacgtgctgccaatctatggcggtcaggcttacggcattcagctg
tctggcctgcgccgtggcgcacagatcatcgtgggtactccaggtcgtgtgatcgaccac
ttggagaagggctccctcgacatttccaacctccgcttcctcgttctggacgaggcagac
gagatgctcaacatgggcttccaagaagacgttgagcgcattttggaggacaccccagag
gacaagcaggttgctttgttctctgccaccatgccaaatggtattcgtcgtttgtctcgc
gactacatgaaggatcctcacgagatccaagtgaagtcgcagacgcgcaccaacacgaac
atcactcagcgttacctcaacgttgcacaccgcaacaagctcgatgccttgacccgtatc
cttgaggtcaccgagttcgaagccatgatcatgttcgtgcgtaccaagcatgaaactgaa
gaagtcgctgaaaagcttcgcgcacgcggattctccgctgccgctatcaacggcgacatc
gctcaggctcagcgtgagcgcaccgtcgaccagctcaaggacggtcgcctcgacatcctc
gttgctaccgacgttgctgcccgtggcctcgacgttgaacgcatcactcacgtgttcaac
tacgacattccaaacgacacggaatcctacgtccaccgcattggtcgtaccggtcgtgca
ggtcgttctggtgaagcaatcttgtttgtcactccacgtgagcgtcgcatgttgcgttcc
atcgagcgtgccaccaacgcaaagctgatcgaaatggatctgccaaccgttgatgaggtc
aatgagtcccgtaaggcaaagtttgctgactccatcaccgagtctcttgaagacgatcag
gtagcaatcttccgtagcctgattaagtcctacgcggaagagcacgatgttccactagaa
gacatcgccgccgcattggctacccaagcacgcgctggttccgaattcttgatgaaggag
ccaccgccagagaagcgccgcgagcgtcgtgaccgcgacgatcgtcgtggcggacgcgac
cgcttcgaccgcgatgaccgccgtggcggccgtgaccgtgaccgtggctcccgcttcgag
cgtaacgacgacatgcagctttaccgcctagcagttggtaagcgccagcatgttcgacct
ggtgccatcgttggtgctctggcaaacgaaggtggcctgtccaacaaggacttcggtcgc
atcaacatcttcgttgatcacaccttggtcgagttaccaaagaacatggatccaagcgtg
atcgatcgcctcagcgatacccgtatctccggccaattgatccacatcgaaaaggacaat
ggccgaccaccacgtcgtaacgatgacggtgaccgcggcggataccgtggcggcgaccgc
ttcgaccgtgacgatcgtcgtggtggacgtggcggacgcgaccgcggcggataccgtggc
ggacgtgaccgcaacgaccgtggtgatcgcggcggctaccgtggtggccgcggcggatac
cgcgactaa
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