Corynebacterium diphtheriae HC03: CDHC03_1345
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Entry
CDHC03_1345 CDS
T01695
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdr
Corynebacterium diphtheriae HC03
Brite
KEGG Orthology (KO) [BR:
cdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdr03019
]
CDHC03_1345 (hrpA)
Enzymes [BR:
cdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDHC03_1345 (hrpA)
Messenger RNA biogenesis [BR:
cdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDHC03_1345 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
HA2_N
AAA_11
ResIII
NACHT
T2SSE
ABC_tran
TsaE
PhoH
AAA_24
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AEX79074
LinkDB
All DBs
Position
1421316..1425260
Genome browser
AA seq
1314 aa
AA seq
DB search
MGKRNLKHSNRRVKPTTQDSPEVKELKASCMSQLSGLGLALHRSFERRIAKAHSTRALEA
IAQDLATALNSIEKRRSSIPVISYPDNLPVSSQRDEIAAAIQENQVVIIAGETGSGKTTQ
IPKICLDLGHGITGLIGHTQPRRLAARTVAERIADELDQPIGESVGYAIRFDDRVSPSTS
IKLMTDGILLAEMQRDRYLNAYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITS
ATIDPERFAHHFSDENGTPAPIIEVSGRTYPVEVLYRPLELEDGTSLIDVDPIDGLISAI
KELMSYGDGDILCFFAGESDIRDAMEAIKEQRWRNVEVTPLFGRLSNQEQHKVFTSHTGR
RIVLATNIAETSLTVPGIHFVVDLGTARISRYSSRTKVQRLPIEPISQASARQRSGRCGR
VADGIAIRLYSEEDFLSRPEFTDPEILRTNLANVILQMASLRLGHIDDFPFIQAPDTKSI
RDGILLLHELGALTTTDTRTDLPRLTTIGKTLARIPLDPRLGRMLIEAERLGCLAHVMVV
VAALSIQDVRERPLDYQAQADQLHARFKDPQSDFSSYLKLWAYINQRRDELSGNAFKKVM
QQEFLHYMRIREWFDLVRQLKSIGEQVGWKSFERSDATDNDCIHQALLAGLLSHIGIKEG
DFREFVGARNTRFMVFPGSSLAKKPPQFVMAGELVETSRLWARDVAAIDPRWVEPLAQNL
LKHQYSEPHWSLKRGAAMVYQRSTLYGVPIVVDRLINLATIDAVGAREIFIREALINGQW
TTHHSFFKNNMQKLEAVNTLEEKARRRDIVVTEDTLYEFYNDRLPQSVVSTRAFDHWWKK
TRTQTPDLLDFDPDKLISDSAEEVNAERYPDSWYDNGVELELRYRFEPGHPDDGVTVNVP
VPYLASLEESGFEWLVPGFIQELLTASLKTLPKHLRKKIVPAPNYANLIQPRISFRKGPL
TQAITNALKDAGITGIEAEDFDLSALPDHLRITFAAIDKHGKVIDKDKNLARLKTRQKNK
IRASALKIGKAVHQSAVTTWTSSTLGKIPEEVSTKVDGQLIKTYPALVIGEQGFSVEAKP
TRAEADASMLTATLAMLMKASNINTQKMLNGLPLQQRVAVENYPHGSSNGLVQDVKAAVI
RDLLIERGGPVRSPEEFDVLKKEITPKVPRLTRQAVVQLAPSINCYLKTRDEVAHWEGDA
IDDISRQLDFLLPPFAVSHHGIRHLARLPRLCEAITIRLDSMSRDSYKDAELQLVINRLE
NALYAKANRGGIPKSKINDIAWKIQELRVSLFAQRLGTAEKVSERKIHKLIEAL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacggaatctaaagcactctaaccgacgcgtaaaaccaacgactcaagattca
ccagaagttaaagagttaaaagcatcatgcatgtcccaattatcaggtttgggacttgcc
ctccaccggtcttttgagcgccgtatcgctaaagcgcacagcacgagggctttagaagct
attgcacaggacctcgcaacagcgcttaactcaattgaaaaacgacgcagcagtatccca
gttatctcctatccggacaatctcccagttagttcacaacgggacgaaatcgctgccgcg
atccaagaaaaccaagttgtcatcatcgctggcgaaacaggttccggtaaaactactcag
attcctaaaatatgtcttgatttgggacacggaattactggcttaattgggcacacgcag
ccacgtcgattagccgcacgaacggttgccgaacgtattgcagacgaattagatcagcca
atcggtgaatctgttggttacgcgattcgcttcgacgatcgtgtctcccccagtacgtct
atcaagctcatgacagacggtattttactggcagaaatgcaacgcgatcgttacctcaat
gcttacgacacaatcatcattgacgaggcacacgaacgaagcctgaatatcgatttcatc
cttggatatctcaaacagctactccctaagcgtccagatctaaaagtcatcatcacatcg
gcaaccattgatcctgaacgattcgcgcaccatttttcggacgaaaatggtacaccagcc
cccattattgaagtgtctgggcgaacctacccagtggaggtactttatcgccccctcgag
cttgaagatggtacgtcgcttatcgacgtcgaccccatcgacggcctaatcagcgccatt
aaggagcttatgagctacggtgacggtgacatcctctgtttctttgccggcgaatcagat
attcgtgacgccatggaagctataaaagagcaacgatggcgtaatgttgaagtcacaccg
ctatttggtcgactgtctaaccaagaacaacataaagtgtttacatcacatactggccgc
cgaattgttcttgcaacaaatattgctgaaacatcactgactgtccccggtattcacttt
gttgtcgatctaggtacagcacgcatatctcggtattccagtcgtacaaaagtacaacga
ttacccatcgaaccgatttcccaagccagcgctcgtcaacgttccggccgctgtggacgt
gtcgccgatggcattgcgattcggttgtactccgaagaggactttctctcacgccctgaa
ttcaccgatccagaaattctgagaacgaatttggccaacgtgattctgcagatggcctca
ctacgcctaggccatatcgacgatttccccttcatccaagcgcccgataccaagtcgatc
cgtgacggaatactgttgttgcacgaacttggtgcattaaccacaacggatacgcggact
gatcttccacggttaacaacaatcggcaagacacttgccagaattccgctcgatccacga
ctaggcagaatgctcatcgaagcagaacgtctaggctgcctcgcccatgtcatggtggta
gtagctgcgctgtcgattcaagacgtgcgcgagcggcctcttgactatcaggcgcaagca
gatcaactccacgctcgattcaaagatcctcaaagcgacttttccagctatctcaaatta
tgggcgtacatcaatcagcgtcgcgatgaattgtcaggaaacgcatttaaaaaggtgatg
caacaagagttccttcactatatgcggattcgtgaatggtttgatctcgttcgccaacta
aaatccataggtgaacaagtcggctggaaatcgtttgaacggtcggacgcaaccgacaac
gattgcattcaccaagctctcttagcggggcttttgtcccatatcggcatcaaagaaggc
gattttcgagaatttgtaggcgcccgcaatacgcgttttatggtcttccctggttcaagt
cttgcgaagaaacctccacaattcgttatggctggagagcttgtcgaaacgtcaagactg
tgggcacgcgacgtcgccgcaatagatccacgttgggtcgagcctctggcacaaaacttg
ctcaaacaccaatattcggagccacattggtctctcaaacgtggtgcagcgatggtttac
cagcgttcaacgctctatggagtgccgatcgttgtcgaccgactgatcaatctagctacc
atcgatgccgttggcgcacgcgagatcttcatccgtgaagctttaattaatgggcaatgg
actacccatcacagctttttcaaaaacaatatgcagaaactagaagctgtaaatactttg
gaggaaaaagcaaggcgacgcgatatcgtagtaaccgaagataccctgtacgagttttac
aatgatcggctcccacaatctgtcgtttccacccgagcgtttgatcattggtggaagaaa
acccgcacacagacacctgatttactcgattttgatcctgacaaacttatttctgatagc
gctgaagaagttaatgcagaacggtatccagatagttggtacgacaacggtgtagagcta
gaactccgttatcgttttgaacctggccatcctgacgacggagttacagtcaacgttcca
gttccatatcttgcgtcacttgaggaaagtggtttcgaatggcttgttcccggttttatc
caagagctgctgactgcttctttaaaaacacttccaaaacatctacgaaaaaaaattgtt
ccggctccgaactatgcgaatctgattcagccacggatttcgttccgaaaaggaccgctt
actcaggctataacgaatgcgctcaaagacgccggaattacggggatcgaagcagaggac
tttgatttatcagcgcttccagatcatttacggattacattcgcagcaatagacaaacat
ggaaaggtaatcgacaaagataagaaccttgctcgtcttaaaacacgtcaaaaaaataaa
attcgtgcgtctgctctcaaaatcggaaaagcagtccaccaaagcgccgtcacaacttgg
acatcctcaactctaggaaagattcctgaagaagtttccacaaaagtagacggccaactc
ataaagacttatcccgccttagtaataggagaacaaggattctcagtcgaggccaaacct
acccgcgccgaagctgacgcgtccatgctgacggcaacgttagcgatgctgatgaaggca
tcaaatattaacacccaaaaaatgcttaatgggttgcctcttcaacaacgtgttgcagtt
gagaactatccccacggcagcagcaatggattagtacaagatgtcaaagctgcggtgatc
cgtgacctactcatcgaacgcggcggaccagtacgttcaccagaagaatttgatgttctt
aaaaaggaaattacccccaaagtgccgaggctgacgcgtcaagcggtcgtgcaattagcc
ccttctatcaattgttatctcaaaactagagacgaagttgcgcactgggaaggtgacgcc
attgatgatattagtaggcaattagatttcctgctccccccatttgccgtatcacatcat
ggaattcgtcatctcgcgcgattaccgcggctttgtgaagctataaccattcggctggat
tcaatgagccgagattcttataaggatgcggagctacaacttgttattaatagactcgaa
aatgccctctatgcgaaggccaatcgtggtggaattccaaaatcaaaaatcaacgatatt
gcgtggaaaattcaagagttacgggttagtctttttgcccagagactaggtactgcagaa
aaagtatcggaacgaaagatccataagctcattgaagctctttaa
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