KEGG   Clostridium drakei: B9W14_00390
Entry
B9W14_00390       CDS       T05484                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cdrk  Clostridium drakei
Pathway
cdrk02020  Two-component system
cdrk02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cdrk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    B9W14_00390
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    B9W14_00390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cdrk03021]
    B9W14_00390
Transcription machinery [BR:cdrk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     B9W14_00390
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID Sigma70_r4 Sigma70_r4_2 HTH_5 HTH_17 Cullin_Nedd8 HTH_IclR HTH_Crp_2 HTH_11 MarR
Other DBs
NCBI-ProteinID: AWI03025
UniProt: A0A2U8DKM1
LinkDB
Position
79094..80461
AA seq 455 aa
MNMDFSLNLTQEQKLIMTQEMQLSVKLLQMSSFELQEYVEKEVQENPVLDAKVGTQSNED
HKEIDYKQLIKYFEFDNYSHHNYEKNDDDEVSPFNFISEKKSLKEYLQEQIRDLNEKDYV
KAVCLYIVENIDARGYLDVSDKEIIEELKISKKLADYSIKTIQSLEPDGIGAKDLKDCLK
IQINKKGLEDENIYKIIDEYLELLAENKYNVIAKYLNIDVKKAQEYGDIIKSLRPRPSSG
FYTGEDVKYIVPDAQIRKIDNEYYIIMNEDAAPKLSINAMYKEIIQNENDKNAVDYVKEK
LNSAIFLIKSIQHRKSTIYRVLEKILELQRDYFEYGDKYLKPMTLKEISESLEMHESTVS
RAIRDKYIYTNNGTIKIKDLFTTGLSKSSTGEDVSTRIIKDAIKDLIDKENKEKPLSDQA
ICDILTGKGMNISRRTVAKYREEIGIKSSKGRKRF
NT seq 1368 nt   +upstreamnt  +downstreamnt
atgaatatggatttcagcttgaatttaactcaggaacaaaaattaataatgactcaagaa
atgcaattatcggttaaattgcttcaaatgtctagttttgagctccaagaatatgttgaa
aaagaagtccaggaaaatccagtattggatgctaaagttggtacacaaagcaatgaagac
cataaagaaattgattataaacagttaattaagtattttgaatttgacaactacagccac
cataactatgaaaagaatgacgatgatgaagtttctccatttaattttatatcagaaaag
aagtctcttaaagaatatttgcaggagcagataagagatttaaatgaaaaggattacgta
aaagctgtttgtttgtatatagttgagaatatagatgcaagagggtatttggatgtttcg
gataaggaaataatagaagaacttaaaatatcaaagaagcttgcagattattctataaaa
acaatacaatcattagagcctgatggcataggtgcaaaagatttaaaggattgtttaaag
atacaaataaataaaaaaggattagaagatgagaatatatataaaataattgatgaatat
ctggaacttctagcagaaaataaatataatgttatagcaaaatatttaaatatagatgta
aaaaaagcgcaggagtatggtgatataataaaatctttaagaccaaggccttctagtggt
ttttatactggagaagatgtaaaatacatagtaccagatgctcaaattagaaaaatagat
aacgaatattacataattatgaatgaagatgctgcacctaagcttagcataaatgcaatg
tataaagaaattattcaaaatgaaaatgataaaaatgcagtggattatgtgaaagaaaaa
ttgaatagtgctatttttttaataaaaagtatacagcatagaaaaagtactatatataga
gttttggaaaaaatattagaacttcaaagagattactttgaatatggagataaatattta
aaacctatgacattaaaagaaatttcagaaagcttagagatgcatgaatcaactgttagt
agggcaataagagataaatatatatataccaataatggtaccataaagattaaagattta
tttactactggattatctaaatctagtacaggcgaagatgtatctacaagaataataaaa
gatgctataaaagatttaatagataaagaaaataaggagaaacctttatcagatcaagct
atatgtgatatattaactggtaaaggtatgaatatttcaagaagaactgtagcaaaatat
agagaggaaattggaataaagtcatcaaaagggagaaaaagattctaa

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