Clostridium drakei: B9W14_00390
Help
Entry
B9W14_00390 CDS
T05484
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cdrk
Clostridium drakei
Pathway
cdrk02020
Two-component system
cdrk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cdrk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
B9W14_00390
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B9W14_00390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdrk03021
]
B9W14_00390
Transcription machinery [BR:
cdrk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B9W14_00390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
Sigma70_r4_2
HTH_5
HTH_17
Cullin_Nedd8
HTH_IclR
HTH_Crp_2
HTH_11
MarR
Motif
Other DBs
NCBI-ProteinID:
AWI03025
UniProt:
A0A2U8DKM1
LinkDB
All DBs
Position
79094..80461
Genome browser
AA seq
455 aa
AA seq
DB search
MNMDFSLNLTQEQKLIMTQEMQLSVKLLQMSSFELQEYVEKEVQENPVLDAKVGTQSNED
HKEIDYKQLIKYFEFDNYSHHNYEKNDDDEVSPFNFISEKKSLKEYLQEQIRDLNEKDYV
KAVCLYIVENIDARGYLDVSDKEIIEELKISKKLADYSIKTIQSLEPDGIGAKDLKDCLK
IQINKKGLEDENIYKIIDEYLELLAENKYNVIAKYLNIDVKKAQEYGDIIKSLRPRPSSG
FYTGEDVKYIVPDAQIRKIDNEYYIIMNEDAAPKLSINAMYKEIIQNENDKNAVDYVKEK
LNSAIFLIKSIQHRKSTIYRVLEKILELQRDYFEYGDKYLKPMTLKEISESLEMHESTVS
RAIRDKYIYTNNGTIKIKDLFTTGLSKSSTGEDVSTRIIKDAIKDLIDKENKEKPLSDQA
ICDILTGKGMNISRRTVAKYREEIGIKSSKGRKRF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaatatggatttcagcttgaatttaactcaggaacaaaaattaataatgactcaagaa
atgcaattatcggttaaattgcttcaaatgtctagttttgagctccaagaatatgttgaa
aaagaagtccaggaaaatccagtattggatgctaaagttggtacacaaagcaatgaagac
cataaagaaattgattataaacagttaattaagtattttgaatttgacaactacagccac
cataactatgaaaagaatgacgatgatgaagtttctccatttaattttatatcagaaaag
aagtctcttaaagaatatttgcaggagcagataagagatttaaatgaaaaggattacgta
aaagctgtttgtttgtatatagttgagaatatagatgcaagagggtatttggatgtttcg
gataaggaaataatagaagaacttaaaatatcaaagaagcttgcagattattctataaaa
acaatacaatcattagagcctgatggcataggtgcaaaagatttaaaggattgtttaaag
atacaaataaataaaaaaggattagaagatgagaatatatataaaataattgatgaatat
ctggaacttctagcagaaaataaatataatgttatagcaaaatatttaaatatagatgta
aaaaaagcgcaggagtatggtgatataataaaatctttaagaccaaggccttctagtggt
ttttatactggagaagatgtaaaatacatagtaccagatgctcaaattagaaaaatagat
aacgaatattacataattatgaatgaagatgctgcacctaagcttagcataaatgcaatg
tataaagaaattattcaaaatgaaaatgataaaaatgcagtggattatgtgaaagaaaaa
ttgaatagtgctatttttttaataaaaagtatacagcatagaaaaagtactatatataga
gttttggaaaaaatattagaacttcaaagagattactttgaatatggagataaatattta
aaacctatgacattaaaagaaatttcagaaagcttagagatgcatgaatcaactgttagt
agggcaataagagataaatatatatataccaataatggtaccataaagattaaagattta
tttactactggattatctaaatctagtacaggcgaagatgtatctacaagaataataaaa
gatgctataaaagatttaatagataaagaaaataaggagaaacctttatcagatcaagct
atatgtgatatattaactggtaaaggtatgaatatttcaagaagaactgtagcaaaatat
agagaggaaattggaataaagtcatcaaaagggagaaaaagattctaa
DBGET
integrated database retrieval system