Clostridium drakei: B9W14_25420
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Entry
B9W14_25420 CDS
T05484
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cdrk
Clostridium drakei
Pathway
cdrk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdrk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9W14_25420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdrk03021
]
B9W14_25420
03019 Messenger RNA biogenesis [BR:
cdrk03019
]
B9W14_25420
Transcription machinery [BR:
cdrk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B9W14_25420
Messenger RNA biogenesis [BR:
cdrk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B9W14_25420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
AAA_22
NACHT
SAP
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AWI07637
UniProt:
A0A2U8DXY8
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All DBs
Position
5652475..5653971
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AA seq
498 aa
AA seq
DB search
MVTKDIEGMTVAELKVLAKSLGIKNISRYKKSELMEEIKKVSPASIEKDGKILREKISPK
SESIANDNEVQSEKETKNQETKVVADKKVVADKVEEHKNNEEHKTNEEEKREKLKEMINE
SDTARGVLEIIENNNYGFLRGRNYLTGPDDIYVSPSQIRRFNLKTGDEVQGKVRIPKEGE
KFKALLYVEKVNGENPERAVGRKPFETLIPIYPNQRLNLETNRENLSTRLMDIISPIGKG
QRGIIVAPPKAGKTTLLKRIAQSISANHPLVKLIVVLIDERPEEVTDMQRNIKGEVIYST
FDEEPEHHTKVAYMVLERAKRMVEQGQDVVILLDSITRLSRAYNLTITPTGRTLSGGLDP
GALIMPKKFFGAARNIEEGGSLTILATALVETGSRMDDMIFEEFKGTGNMEVHLNRRLQE
RRIFPAIDVYKSGTRRDDLLFENQAEKDAAFNIRKVLYDENNTQNVTEQLINLLSKTKNN
EEFINLASKMDMTKNVDK
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttggtgactaaggatatagagggcatgactgttgctgaattgaaagtattggcaaaaagt
cttggaattaagaatatatctaggtataaaaaatctgaattgatggaagaaattaaaaaa
gtttctcccgcatctattgaaaaggatggaaaaatacttagagaaaaaataagccctaaa
agtgaatcaatagctaatgacaatgaagttcagtcagaaaaagaaacaaaaaatcaagaa
acaaaagtagtggctgataaaaaagtagtagctgataaagttgaagaacataaaaacaat
gaagaacataaaactaatgaagaagaaaaaagagaaaagcttaaagagatgataaatgaa
tctgatacagcaagaggagtactagaaataatagaaaataataattacggattcttgaga
ggcagaaattatttaacgggaccagatgatatatatgtatccccatctcaaataagaaga
tttaatttaaaaactggtgatgaagttcaaggaaaagttagaattcctaaagaaggagaa
aagtttaaggcgctgctctatgtagaaaaggtaaatggtgaaaatccagaaagagcagtt
ggaagaaaaccatttgaaactcttattcctatctatccaaatcaaagattgaatctagag
actaatcgggaaaatttatcaacaagacttatggatataatatctcctataggtaaagga
caaaggggaattatagttgctccacctaaagcaggtaaaaccactcttctaaaaaggata
gctcaaagtatatctgcaaatcatccattagttaaactcattgttgttttaatagatgaa
agacctgaagaagttacagacatgcaaaggaatattaaaggtgaagttatttattcaaca
tttgatgaagaacctgaacaccatacaaaagttgcgtatatggtacttgaaagagcaaaa
agaatggtagaacagggtcaggatgtagtaattttactagatagtataacaaggctttct
agagcatataatttaactataactcctacaggtaggactctttcaggtggattagatcca
ggagcattaataatgcctaaaaagttttttggtgcagcaagaaatatagaagaaggcggc
agtcttactatacttgctacagcacttgtagaaacaggaagcagaatggatgatatgata
tttgaagagtttaagggtacaggaaatatggaagtacatcttaatagaagacttcaagag
agaagaatattccctgctatagatgtatataaatcaggaacaagaagagacgatttatta
tttgaaaatcaagcagagaaagacgctgcatttaatataagaaaagttttatatgatgaa
aacaatactcaaaatgttacagagcagttaataaaccttctgtcaaagacaaaaaataat
gaagagtttataaatttggccagtaaaatggatatgactaagaacgtggataaataa
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