Corynebacterium diphtheriae C7 (beta): CDC7B_0825
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Entry
CDC7B_0825 CDS
T01699
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cds
Corynebacterium diphtheriae C7 (beta)
Pathway
cds03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDC7B_0825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cds03400
]
CDC7B_0825 (mfd)
Enzymes [BR:
cds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDC7B_0825 (mfd)
DNA repair and recombination proteins [BR:
cds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CDC7B_0825 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
AAA_30
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AEX67022
LinkDB
All DBs
Position
838468..842268
Genome browser
AA seq
1266 aa
AA seq
DB search
MFVPDKSVPAAQPPMLAGLLKVAATDPKIKGLLQHVGEPHLHITGIDQARPWAIAALAHR
APVLVVTATGREAEDLSAELRAMLGEKVTWFPAWETLPHERLSPGADIAGQRARILSHIA
DYSVVVTAARGFSQPIVSQVAGRDPLVLEVDSECSLEEATQQLVFRAYHHVDLVAKRGEF
ATRGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEVFPARELPIT
QEIAQRAAELAVKFQGNPTLQELLAKISDSIPSDGMEALIPALVDQPMVTLAELMPENTH
IVVVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADAPVATRGLDLDASSYRSYESLEKT
AQKHTMPWWTFAPPGMFETSDGDTLPLEFEPGPTPRGDLEQIDQMMALLLAHTRDGGAAA
FIAPAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGLVFPKVRKQPGKP
ALPLVVITETDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTE
RVIQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDW
KNTKRKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAID
AVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFE
ERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVSEARIVVAHGQMSEELL
EQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVY
RKLAASANDKDLALVVEEMKDRFGPVPHEVRRLLAVSRLRHLARATGLSDIGVQGTRIKL
HPVELTDSKQVRLKRLAPSATYRAAAKAIQVPFPKEGAKVTDKQLRDVELLQWVADFIAE
MFEHDRVSVTGEKLPDKVISVAQPMSPAAARAERVAQRAAARRQARNDDEDYEDRREARR
RKYRMR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgcctgataaatccgtgcctgcggcacaaccaccaatgcttgctggtttgctc
aaagttgctgccaccgatccaaaaatcaagggactgcttcagcatgtaggcgaaccccat
ctgcatatcacaggcatcgatcaggcacggccgtgggcgattgctgcgttggcacaccgc
gccccagtgcttgtggtgacggctacggggcgtgaggcagaggacttatctgctgagctg
cgtgccatgttgggggaaaaggtgacgtggtttccggcatgggagacgttgccgcatgaa
cgcttgagcccaggtgctgatattgctggtcagcgagcacgtatcttgtcgcatattgca
gactattcagtggtggtgacggctgcgcgtggcttcagccagccgattgtttcacaggtt
gctggtcgagatcctttggtgttggaagttgattccgaatgcagtttggaagaagcaaca
cagcagttggtgtttcgggcttatcaccatgtggatttggtggctaagcgtggtgaattt
gcgacgcgcggcggcattttggatgtgtttcccacaacggctcagcatccagtacgcgtg
gaattttggggcgatgaggtttcagaaatccgtggattccaggttgctgatcagcgtgcg
attcctgattcggatgtgtcgcgggtagaggttttcccagcgagagaactgcctattacc
caagaaattgcgcaacgtgcagctgagctcgctgtgaagtttcaaggaaacccaacgttg
caggagctactggctaaaatttctgactctatcccgtcagatggcatggaggccttgatc
ccagcgttggttgatcaacccatggttacccttgctgagcttatgcccgaaaacacccat
attgtggtggtcggtcccgaaaagattcgtactcgtgtagcagatcttcaagctacggat
gccgagtttttggcggctggttgggaggctgctgctatgggcgctgatgctcccgtggca
acgcgtggcctcgatcttgatgccagctcgtatcgctcctatgaatcgctggaaaagaca
gcacagaagcacaccatgccatggtggacttttgcgccacctggcatgtttgaaacctca
gacggcgacaccctcccgttggaatttgagccgggacctacgccgcgtggcgatctcgaa
cagatcgatcagatgatggctctgctacttgcacatacgcgcgacggcggtgcggcagcc
tttattgctcctgctcaaggcgctattaagcgcatggtggaacgctttaaggaacaagga
atccccacgaaggtggcaacacctggctggcagccaaccttgggtgaagtgacactgtat
caggcgatgagccatgcaggtttggtatttcccaaggtacgaaagcaacctgggaagcct
gcattgccgctggtggtgatcacagaaactgaccttaccggtaaccgagttggtgacatt
gctggtgcgaagcgtcgcccagccaagcgccgccaccgtgtggacccgcttgctttgaaa
accggcgactatgtggtccatgaaacccatggcatcggtcggttcctcaagatgaccgag
cgtgtgattcagtccggtgatgagacttcgcggcgcgaatacatcgtgttggaatacgcg
gcgtcgaaacgcgggcagccagcagatcaactgtatgtgcctatggattccctcgacatg
ctgagtaaatatgtcggcggtgaaaaacctaccctttctaaaatgggtggctcggactgg
aagaacaccaaaaggaaagctcgcgcagcggtgcgagaaatcgctggtgaactagtcgag
ctgtatgccaagcggcaatccgcgccggggcatgcgtttgcacctgattccccgtggcag
cacgagatggaagataacttcccctatgtggaaaccgaagatcagatgcttgctattgac
gcggtgaaagcggacatggagaagccttcgccaatggaccgcgtggtggtcggtgacgta
ggttatggcaaaaccgaagttgctgtgcgtgcggcattcaaggcggtacaagatggtcgt
caagtcgtggtgcttgttcctacaaccttgctggcccaacagcatttgagcacctttgaa
gaacgcatggcaggattccccgtgacgatcaaggggctgagccgttttacctctcctagt
gaatcaaaggagatccttaaagggcttgccgacggctccgttgacattgtgatcggtacg
caccgcctgctgcaaacaggtgtgcagtggaaaaatctgggccttgtcatcgtggacgag
gagcagcgttttggtgttgaacacaaggaacacatcaaagcattgcgtacccatgtggac
gtgctcacgatgtcggcaactccgatcccgcgcactttggagatgtcgatggcgggtatc
cgtgagatgtcgaccattttgaccccgccagaagatcgacacccaattttgacctacgtg
ggcgcccaagaagataaacaagtagcggcagccattaggcgtgagctgcttcgtgatggc
caagttttctatgtgcataacaaagtctctgacatcgagaaaaaggctcgggaactgcgt
gaactcgtatcggaagcacgcattgtggtggcgcatgggcaaatgagcgaagagttacta
gagcaaactgttcagggattctgggatcgtgaatacgatgttctggtctgtaccacgatt
gttgaaaccggtctcgacatcgcgaacgccaacacgcttatcgtggaaaatgctcaccac
atgggtctgtcgcagctgcaccagttgcgtgggcgcgtagggcgttcccgcgagcggggt
tacgcttacttcttgtatcccaagggtgccacgttgacggaaaactcctatgaccgtctt
gctacgatcgcgcaaaacaacgatcttggtgctggtatggcggtggccatgaaagacttg
gaaatgcgcggtgccggcaatgtgttgggcgcgcaacagtctggtcatatcgccggagtg
ggctttgacctgtatgttcgtttggtgggagaagcggtcgaggcataccgtgcgctagca
gatggcaaggttgccgatgccacggagcaggggccgaaggagatccgcatcgatttgcct
gtcgacgcccacatccccgaggactacatcaactcagaacgattgcgccttgaggtctat
cgtaaacttgccgcctcggccaatgataaggacttggcgcttgtggttgaggaaatgaaa
gaccgcttcggtcccgttccccacgaggtaaggcggctgctggcggtgtcgcgcctgcgt
cacttagcacgcgcgacagggctaagcgatattggtgtgcagggcacacgcatcaagctg
cacccagtggaattgactgattctaagcaggtgcgtctcaagcgtctggcaccgtctgct
acatatcgcgctgctgctaaggccatccaggtgccatttcctaaagaaggcgcgaaggta
acggacaaacagcttcgcgatgttgaactattgcagtgggttgctgactttatagcggag
atgtttgaacacgatcgtgtatctgtgacaggggagaagctgccggataaagtgatctcg
gtggcgcagcccatgagccctgctgcggcgcgtgcggagcgcgtagcgcaacgggcagcg
gcgcgcagacaagcgcgaaatgacgatgaggactacgaagatcgtagagaagcgcgacgt
aggaaataccgtatgcgttaa
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integrated database retrieval system
