Corynebacterium diphtheriae HC01: CDHC01_1367
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Entry
CDHC01_1367 CDS
T01693
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdt
Corynebacterium diphtheriae HC01
Brite
KEGG Orthology (KO) [BR:
cdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdt03019
]
CDHC01_1367 (hrpA)
Enzymes [BR:
cdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDHC01_1367 (hrpA)
Messenger RNA biogenesis [BR:
cdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDHC01_1367 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
AAA_11
ResIII
NACHT
T2SSE
ABC_tran
PhoH
TsaE
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AEX74616
LinkDB
All DBs
Position
1430005..1433949
Genome browser
AA seq
1314 aa
AA seq
DB search
MGKRNLKHSNRRVKPTTQDSPEVKELKASCMSQLSGLGLALHRSFERRITKAHSTRALEA
IAQDLATALNSIEKRRSSIPVISYPDNLPVSSQRDEIAAAIQENQVVIIAGETGSGKTTQ
IPKICLDLGRGITGLIGHTQPRRLAARTVAERIADELDQPIGESVGYAIRFDDRVSPSTS
IKLMTDGILLAEMQRDRYLNAYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITS
ATIDPERFAHHFSDENGTPAPIIEVSGRTYPVEVLYRPLELEDGTSLIDVDPIDGLISAI
KELMSYGDGDILCFFAGESDIRDAMEAIKEQRWRNVEVTPLFGRLSNQEQHKVFTSHTGR
RIVLATNIAETSLTVPGIHFVVDLGTARISRYSSRTKVQRLPIEPISQASARQRSGRCGR
VADGIAIRLYSEEDFLSRPEFTDPEILRTNLANVILQMASLRLGHIDDFPFIQAPDTKSI
RDGILLLHELGALTTTDTRTDLPRLTTIGKTLARIPLDPRLGRMLIEAERLGCLAHVMVV
VAALSIQDVRERPLDYQAQADQLHARFKDPQSDFSSYLKLWAYINQRRDELSGNAFKKVM
QQEFLHYMRIREWFDLVRQLKSIGEQVGWKSFERSDATDNDCIHQALLAGLLSHIGIKEG
DFREFVGARNTRFMVFPGSSLAKKPPQFVMAGELVETSRLWARDVAAIDPRWVEPLAQNL
LKHQYSEPHWSLKRGAAMVYQRSTLYGVPIVVDRLINLATIDAVGAREIFIREALINGQW
TTHHSFFKNNMQKLEAVNTLEEKARRRDIVVTEDTLYEFYNDRLPQSVVSTRAFDHWWKK
TRTQTPDLLDFDPDKLISDSAEEVNAERYPDSWYDNGVELELRYRFEPGHPDDGVTVNVP
VPYLASLEESGFEWLVPGFIQELLTASLKTLPKHLRKKIVPAPNYANLIQPRISFRKGPL
TQAITNALKDAGITGIEAEDFDLSALPDHLRITFAAIDKHGKVIDKDKNLACLKTRQKNK
IRASALKIGKAVHQSAVTTWTSSTLGKIPEEVSTKVDGQLIKTYPALVIGEQGFSVEAKP
TRAEADASMLTATLAMLMKASNINTQKMLNGLPLQQRVAVENYPHGSSNGLVQDVKAAVI
RDLLIERGGPVRSPEEFDVLKKEITPKVPGLTRQAVVQLAPSINCYLKTRDEVAHWEGDA
IDDISRQLDFLLPPFAVSHHGIRHLARLPRLCEAITIRLDSMSRDSYKDAELQLVINRLE
NALYAKANRGGIPKSKINDIAWKIQELRVSLFAQRLGTAEKVSERKIHKLIEAL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacggaatctaaagcactctaaccgacgcgtaaaaccaacgactcaagattca
ccagaagttaaagagttaaaagcatcatgcatgtcccaattatcaggtttgggacttgcc
ctccaccggtcttttgagcgtcgtatcactaaagcgcacagcacgagggctttagaagct
attgcacaggacctcgcaacagcgcttaactcaattgaaaaacgacgcagcagtatccca
gttatctcctatccggacaatctcccagttagttcacaacgggacgaaatcgctgccgcg
atccaagaaaaccaagtcgtcatcatcgctggcgaaacaggttccggtaaaactactcag
attcctaaaatatgtcttgatttgggacgcggaattactggcttaattgggcacacgcag
ccacgtcgattagccgcacgaacggttgccgaacgtattgcagacgaattagatcagcca
atcggtgaatctgttggttacgcgattcgcttcgacgatcgtgtctcccccagtacgtct
atcaagctcatgacagacggtattttactggcagaaatgcaacgcgatcgttacctcaat
gcttacgacacaatcatcattgacgaggcacacgaacgaagcctgaatatcgatttcatc
cttggatatctcaaacagctactccctaagcgtccagatctaaaagtcatcatcacatcg
gcaaccattgatcctgaacgattcgcgcaccatttttcggacgaaaatggtacaccagcc
cccattattgaagtgtctgggcgaacctacccagtggaggtactttatcgccccctcgag
cttgaagatggtacgtcgcttatcgacgtcgaccccatcgacggcctaatcagcgccatt
aaggagcttatgagctacggtgacggtgacatcctctgtttctttgccggcgaatcagat
attcgtgacgccatggaagctataaaagagcaacgatggcgtaatgttgaagtcacaccg
ctatttggtcgactgtctaaccaagaacaacataaagtgtttacatcacatactggccgc
cgaattgttcttgcaacaaatattgctgaaacatcactgactgtccccggtattcacttt
gttgtcgatctaggtacagcacgcatatctcggtattccagtcgtacaaaagtacaacga
ttacccatcgaaccgatttcccaagccagcgctcgtcaacgttccggccgctgtggacgt
gtcgccgatggcattgcgattcgattgtactccgaagaggactttctctcacgccctgaa
ttcaccgatccagaaattctgagaacgaatttggccaacgtgattctgcagatggcctca
ctacgcctaggccatatcgacgatttccccttcatccaagcgcccgataccaagtcgatc
cgtgacggaatactgttgttgcacgaacttggtgcattaaccacaacggatacgcggact
gatcttccacggttaacaacaatcggcaagacacttgccagaattccgctcgatccacga
ctaggcagaatgctcatcgaagcagaacgtctaggctgcctcgcccatgtcatggtggta
gtagctgcgctgtcgattcaagacgtgcgcgagcggcctcttgactatcaggcgcaagca
gatcaactccacgctcgattcaaagatcctcaaagcgacttttccagctatctcaaatta
tgggcgtacatcaatcagcgtcgcgatgaattgtcaggaaacgcatttaaaaaggtgatg
caacaagagttccttcactatatgcggattcgtgaatggtttgatctcgttcgccaacta
aaatccataggtgaacaagtcggctggaaatcgtttgaacggtcggacgcaaccgacaac
gattgcattcaccaagctctcttagcggggcttttgtcccatatcggcatcaaagaaggc
gattttcgagaatttgtaggcgcccgcaatacgcgttttatggtcttccctggttcaagt
cttgcgaagaaacctccacaattcgttatggctggagagcttgtcgaaacgtcaagactg
tgggcacgcgacgtcgccgcaatagatccacgttgggtcgagcctctggcacaaaacttg
ctcaaacaccaatattcggagccacattggtctctcaaacgtggtgcagcgatggtttac
cagcgttcaacgctctatggagtgccgatcgttgtcgaccgactgatcaatctagctacc
atcgatgccgttggcgcacgcgagatcttcatccgtgaagctttaattaatgggcaatgg
actacccatcacagctttttcaaaaacaatatgcagaaactagaagctgtaaatactttg
gaggaaaaagcaaggcgacgcgatatcgtagtaaccgaagataccctgtacgagttttac
aatgatcggctcccacaatctgtcgtttccacccgagcgtttgatcattggtggaagaaa
acccgcacacagacacctgatttactcgattttgatcctgacaaacttatttctgatagc
gctgaagaagttaatgcagaacggtatccagatagttggtacgacaacggtgtagagcta
gaactccgttatcgttttgaacctggccatcctgacgacggagttacagtcaacgttcca
gttccatatcttgcgtcacttgaggaaagtggtttcgaatggcttgttcccggttttatc
caagagctgctgactgcttctttaaaaacacttccaaaacatctacgaaaaaaaattgtt
ccggctccgaactatgcgaatctgattcagccacggatttcgttccgaaaaggaccgctt
actcaggctataacgaatgcgctcaaagacgccggaattacggggatcgaagcagaggac
tttgatttatcagcgcttccagatcatttacggattacattcgcagcaatagacaaacat
ggaaaggtaatcgacaaagataagaaccttgcgtgtcttaaaacacgtcaaaaaaataaa
attcgtgcgtctgctctcaaaatcggaaaagcagtccaccaaagcgccgtcacaacttgg
acatcctcaactctaggaaagattcctgaagaagtttccacaaaagtagacggccaactc
ataaagacttatcccgccttagtaataggagaacaaggattctcagtcgaggccaaacct
acccgcgccgaagctgacgcgtccatgctgacggcaacgttagcgatgctgatgaaggca
tcaaatattaacacccaaaaaatgcttaatgggttgcctcttcaacaacgtgttgcagtt
gagaactatccccacggaagcagcaatggattagtacaagatgtcaaagctgcggtgatc
cgtgacctactcatcgaacgcggcggaccagtacgttcaccagaagaatttgatgttctt
aaaaaggaaattacccccaaagtgccggggctgacgcgtcaagcggtcgtgcaattagcc
ccttctatcaattgttatctcaaaactagagacgaagttgcgcactgggaaggtgacgcc
attgatgatattagtaggcaattagatttcctgctccccccatttgcagtatcacatcat
ggaattcgtcatctcgcgcgattaccgcgactttgtgaagctataaccattcggctggat
tcaatgagccgagattcttataaggatgcggagctacaactggttattaatagactcgaa
aatgccctctatgcgaaggccaatcgtggtggaattccaaaatcgaaaatcaacgatatt
gcgtggaaaattcaagagttacgggttagtctttttgcccagagactaggtactgcagaa
aaagtatcggaacgaaagatccataagctcattgaagctctttaa
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