Candida dubliniensis: CD36_03570
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Entry
CD36_03570 CDS
T01140
Name
(RefSeq) 3'-5' exoribonuclease, exosome subunit, putative
KO
K07573
exosome complex component CSL4
Organism
cdu
Candida dubliniensis
Pathway
cdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD36_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_03570
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CD36_03570
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CD36_03570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
ECR1_N
Motif
Other DBs
NCBI-GeneID:
8044565
NCBI-ProteinID:
XP_002417029
UniProt:
B9W7F8
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All DBs
Position
1:complement(823766..824734)
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AA seq
322 aa
AA seq
DB search
MSDNIPGGGVVPGQYITPTYKLENNDSSIPVKYIPGPGTIISNINIPTTTTTTPTTTATS
NLIKSMPIIVSTILGTVSISPIDQTQSTSSTNNDDDMIIDHEQTQTKQDEDKYVKSYLVT
VIPKSTKLQPTTTTNNSGAVSSIALPKENDIVLVRITKITKIQAYCEIISLDTTTNILSD
SGISSNGNGSHVSMSTTGSNSQHLFNQNSIACSQSTNQSVQIYELGENFKGIIRINDIRS
TERDKLKIIDCFKPGDIVKAQVISLGDGSNYYLSTAKNELGVVFAKSENGAGDLMYPIDW
QNMIDINSGIIEKRKNANPFLN
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatattcctggtggtggtgttgttcctggacaatatatcacacctacttat
aaattagaaaacaatgattcatctataccagtgaaatatatacctggaccggggacaata
atatcaaatatcaatatacctaccaccaccaccaccaccccaacaacaacagcaaccagt
aatttaataaaatcaatgccaattatagtctcaaccatattagggacagtgtctatttca
cctattgatcaaacacaatcaacatcatctaccaataatgatgatgatatgattattgat
catgaacaaacacaaactaaacaagatgaagataaatatgtcaagagttatttagtcaca
gtgatacctaaatcaactaaacttcaacccactacgaccaccaataactctggtgctgta
tcttcaattgctttacctaaagaaaatgatatcgtattagttcgtattactaaaatcacc
aaaattcaagcatattgtgaaatcatatcattggatactacaaccaacattttactggat
tcaggtattagtagtaatggtaatggatcacatgtatcaatgtctactacgggtagtaat
tctcaacatttatttaatcaaaattctattgcttgtagtcaatcaactaatcaatcagta
caaatttatgaattgggagaaaattttaaaggaatcattagaattaatgatattagatct
actgaaagagataaattgaaaataattgattgttttaaacctggagatattgttaaagct
caagttatatcattaggtgatggatcaaattattatttatcaactgctaaaaatgaatta
ggagtagtattcgctaaaagtgaaaatggagctggtgatttaatgtatcctatagattgg
caaaatatgattgatattaatagtggaattatagaaaaacgtaaaaatgctaatccattt
ttaaactaa
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