Candida dubliniensis: CD36_05320
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Entry
CD36_05320 CDS
T01140
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cdu
Candida dubliniensis
Pathway
cdu03013
Nucleocytoplasmic transport
cdu03015
mRNA surveillance pathway
cdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CD36_05320
09122 Translation
03013 Nucleocytoplasmic transport
CD36_05320
03015 mRNA surveillance pathway
CD36_05320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_05320
03041 Spliceosome [BR:
cdu03041
]
CD36_05320
03009 Ribosome biogenesis [BR:
cdu03009
]
CD36_05320
03012 Translation factors [BR:
cdu03012
]
CD36_05320
Enzymes [BR:
cdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD36_05320
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CD36_05320
mRNA cycle factors
Stress granule specific factors
CD36_05320
Spliceosome [BR:
cdu03041
]
Complex C
Other components
EJC/TREX
CD36_05320
Ribosome biogenesis [BR:
cdu03009
]
Eukaryotic type
90S particles
Helicases
CD36_05320
Translation factors [BR:
cdu03012
]
Eukaryotic type
Initiation factors
eIF-4
CD36_05320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
AAA_30
Cas3-like_C_2
DUF4767
AAA_22
StrH_N
AAA
COG4_N
UvsW-1
Motif
Other DBs
NCBI-GeneID:
8044735
NCBI-ProteinID:
XP_002417198
UniProt:
B9W7X7
LinkDB
All DBs
Position
1:complement(1218467..1219666)
Genome browser
AA seq
399 aa
AA seq
DB search
MDDFDRDLDNELEFSHKSTKGIKVHRTFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQI
ISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDY
MNIHTHACIGGKNVGDDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADEL
FTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIK
QFYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMK
QDERDSIMNEFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFG
RKGTAINLITKDDVATLKDLEKYYSTKIKEMPMNINDIM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggacgattttgatagagatttagataatgagttggaatttagtcataaatcaacgaaa
ggaataaaggtccatcgtacatttgaaagtatgaatttaaagcccgatcttttaaaaggg
atatatgcctatggatttgaagccccatctgccattcaatctagggctattatgcaaatc
attagtggtagagataccattgcacaagcccaatctggaactgggaaaactgccacgttt
tctatcggtatgcttgaagtcatagataccaaatcaaaggaatgccaggcacttatcttg
tctcctactagagagttggcaatacaaatccaaaatgtggtaaagcatttgggcgattat
atgaatattcacactcatgcctgtattggtgggaaaaatgtgggtgatgatgtgaagaaa
ttgcaacaaggccaacagatagttagtgggacaccgggtagagtcattgatgtgataaaa
agaagaaatcttcaaactagaaatataaaggttcttattttagatgaggccgatgaactt
tttacaaaagggtttaaggaacagatctacgagatttacaagcacttgccgccttcggtt
caagtagtagttgttagtgccacgttaccgcgtgaagtgttggagatgaccagtaagttt
actactgatccagtgaaaatcttggtgaagagggatgagatttcacttctgggaatcaaa
caattttatgtccaatgtgaacgtgaagattggaaatttgatacgctttgtgacttgtat
gataatcttaccataactcaggcggtgatattttgtaataccaagttgaaggtcaattgg
cttgctgaccagatgaaaaagcaaaattttactgttgtggcaatgcatggtgatatgaaa
caagatgaacgagattcaattatgaacgagtttagaagggggaattcaagggtattaata
tctacagatgtttgggcaaggggaattgatgttcaacaagtctcattggtgataaattat
gatttaccaactgataaggaaaattatattcacagaattggacgatctggtagatttggt
agaaaaggaacagcaataaacttgataactaaagatgatgtggccactcttaaagatttg
gagaaatattattcaacgaaaattaaggaaatgccaatgaatattaatgatataatgtaa
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