Candida dubliniensis: CD36_18280
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Entry
CD36_18280 CDS
T01140
Name
(RefSeq) nonsense-mediated mrna decay protein, putative
KO
K14327
regulator of nonsense transcripts 2
Organism
cdu
Candida dubliniensis
Pathway
cdu03013
Nucleocytoplasmic transport
cdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CD36_18280
03015 mRNA surveillance pathway
CD36_18280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_18280
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CD36_18280
mRNA cycle factors
P-body specific factors
CD36_18280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
CDC45
Motif
Other DBs
NCBI-GeneID:
8045861
NCBI-ProteinID:
XP_002418306
UniProt:
B9WB36
LinkDB
All DBs
Position
2:complement(758045..761143)
Genome browser
AA seq
1032 aa
AA seq
DB search
MTIELDKRRKELHILNVKSWAGEFTYETAAKLDSSLKKNSTFIKKVKSISNESSSSILKD
IQTLSIEKYLSEVLTSLTEALSKVSKSDDILAAMEVVSALHQRFTSQFSPMLLVNMLVAI
SNPGPNEVTDEKEDTSRILRQRNLLKLIMEFYIIGIFTNLKMCSKDIIPDEILVKYAKSA
SEPIIIVVLKDLLTYKIKSGNTLAIVQSFLKRFKHIIYDSTNELLQFEVRNVLQQIFTIY
TRTIFETSVELKKRVHQVTEKGKKASIRTGRILEENQIEIESVTKLFEKFKSTSEFVSSI
LDVPLPNELQADDQDKEGEEPTNAVVEVVKSKSMNEDDLNGVWEDIKEKNFYTVIPSVGE
LIEAHPNTDKESRTSQSRDGERIQAFLQKLENINSYELDQLVVEFNNLNLNNKATKNRIM
KFFVDTASIDSLKYYTRFLKINEVNLSDLIEELINYLDKGFRSQLYQNKLNFKNILFFVE
MIKFKMIPTHIIFHKIRKLTLNITSTNNIDILSVFYEHVGRFSLNDPDYKDLMREMIDML
KETSKRPNLKINDKLAINNLLLIVEPPTTKVKSLQTKPELSPKSQFIQRLIRVELDNTSL
PLVVNLLKKIHMKQEEECCATILDCFAHPELINYDNITALAAVLEVYFTKYKKIVVYTVD
TTIENIIRGLELNDYRMNRVRMAQVKFVAEMYNHRVINFKLVNDLLYRILCFGHPNNQPL
PNNWDVEIDLPDNYFRIQLCCSLLNNLKSIFIDTDVLSKKKAHNRAVELKKRNDINKDLL
GVFITFLQYYLFCKEKPLPVELDFKLNDLFTKYKSIPTVKRYDTLQEIGKRLQESIQRKR
EAESYLDNSDEALVVDDDDDDEDVTEDYDNGEDIDSDEDDEDDEDDEDGESEEDNDEESE
REDDISDTESEGVSEEDRLRLEAEKKFMDDLDKEYQKILIDSYDLSSSQNSSNRNKLLMP
TPRKLFVEKNLVTPSTDKSKVSFGLLTRKGKATDIKKLQLPSDTKFAESVLKEKEHQRQD
RERIMKLVSNME
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgacaattgaattggataagagaagaaaagagctacatattttgaatgtaaaatcttgg
gcaggagagtttacatacgaaactgctgccaaactagattcctcattgaagaagaattct
acctttataaaaaaagtaaaatcaatcagcaatgaatcatcactgtcaatactaaaagat
attcaaacattatctatcgagaaatacttgagcgaagtgttaacttccttgactgaagcg
ttgtcaaaagtctccaagagtgatgatattttagccgccatggaagttgtttcggctttg
caccaaagatttacttcccaattttcgccaatgcttttggtaaatatgttagtagcaatt
tccaacccaggtcccaacgaagtgactgacgaaaaagaggatacatcccgtattttaaga
caaagaaatcttttgaagttgattatggagttttatataatcggaatattcaccaatttg
aaaatgtgcagtaaagacattattcctgatgaaatattggtaaagtatgcaaaatcagct
tcagaaccaattataattgttgtgctaaaggatttattaacttacaaaattaaactggga
aacactttagcaatagttcagtcatttttaaaaagattcaaacatataatatatgattcc
accaatgagctattacaatttgaagtgagaaatgtgcttcaacaaattttcacaatttat
accaggacaatctttgagacactggttgaattgaaaaagagagtgcaccaagtgacggag
aaaggcaaaaaggcgtcaatcagaacaggtcgcatattggaggaaaatcagatcgagata
gaaagtgtcaccaagctatttgaaaagtttaagtctacgtccgagtttgtatcgtcaatt
cttgatgttcctttaccaaatgagcttcaagcagatgaccaggataaagagggggaagag
cctacaaatgctgtggtagaagtggttaaatccaagtctatgaacgaagacgatctcaat
ggggtttgggaagatattaaggaaaagaatttttacactgtgattcctctggtaggcgag
ctaatcgaggcacatccaaacacagacaaagaatcacggacatcacaatccagagatgga
gagagaattcaagcttttttgcaaaaattggaaaatatcaactcatatgaattggatcaa
ttggtggttgaattcaacaacttaaacttaaacaataaggcgaccaaaaatagaattatg
aaatttttcgtggacactgcaagtatcgacagcttgaagtactacactaggtttctcaaa
ataaacgaagtgaacctatctgacttgatagaagaattaatcaactacttggacaaaggt
ttcagatcgcagctttatcaaaacaaattgaattttaagaatattttatttttcgttgaa
atgattaagttcaaaatgatcccaacacacataatatttcacaaaatccgaaaattgact
ttgaatatcacctctacaaataacattgacatcctttctgtgttttatgaacatgtgggt
cgattctcattgaatgatcctgattataaagatttgatgcgagaaatgattgacatgttg
aaggaaacactgaagagacctaacttaaaaattaacgacaaactagcaataaataactta
cttcttattgttgagcccccaacaacaaaggtgaaatcattgcagacaaagcctgaatta
tctccaaaactgcaatttattcaaagattaatcagggttgaattggataatacatcactt
ccattggtagtaaacttgttaaaaaaaattcatatgaaacaagaggaggaatgctgcgct
acaattttagattgctttgcccatcctgaattgattaattacgacaacattacagcattg
gctgctgttttagaagtatacttcaccaaatataagaaaattgttgtttataccgttgac
accacaatcgagaatatcatccgtggattggaactcaatgattatagaatgaatagagtt
agaatggcacaggtcaagtttgtcgcggaaatgtacaaccatagggtaataaatttcaaa
cttgttaatgatttattataccggattctttgctttggtcacccaaataaccaaccttta
ccgaataactgggatgttgaaattgatttaccagataactacttcagaatccagttgtgt
tgttcattgttgaacaatttaaaatcaatctttattgatactgacgtactttcgaaaaag
aaagcacataatcgtgcagttgagttgaagaaaaggaatgacataaataaagatttattg
ggagtttttataacatttttgcagtattacttgttttgcaaggagaagccattacctgtt
gagctagactttaaattaaacgacttgttcaccaaatacaaaagcatacctaccgttaag
cggtatgacactttacaagagataggaaaaagactccaagagctgattcagagaaaaagg
gaggcagaatcctatttggacaacagcgatgaggcgttggtggttgatgatgatgatgac
gacgaggacgttactgaagattatgacaatggtgaagacattgactcagatgaagatgac
gaggacgacgaggacgatgaagatggcgagagtgaagaagataatgatgaggagagtgag
cgagaagatgatattagtgacactgaaagcgaaggagtctctgaagaagacaggttgcgt
ttagaagccgaaaagaagttcatggatgatcttgataaagagtaccaaaagattttgatt
gattcctacgatttatcttcgtcacagaattcctctaatagaaataaattattaatgcca
acaccacggaaactatttgttgaaaaaaatcttgtaactccttcaactgacaagagcaaa
gtttcgtttgggttgttaactagaaaaggtaaagctacagatatcaagaaacttcaactt
ccaagtgacaccaagtttgctgagtcggtattaaaggaaaaagaacatcaacgacaagat
cgtgaacgaatcatgaagttggtttccaatatggaatga
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