Candida dubliniensis: CD36_40290
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Entry
CD36_40290 CDS
T01140
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cdu
Candida dubliniensis
Pathway
cdu03013
Nucleocytoplasmic transport
cdu03015
mRNA surveillance pathway
cdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CD36_40290
09122 Translation
03013 Nucleocytoplasmic transport
CD36_40290
03015 mRNA surveillance pathway
CD36_40290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_40290
03041 Spliceosome [BR:
cdu03041
]
CD36_40290
Enzymes [BR:
cdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD36_40290
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CD36_40290
Spliceosome [BR:
cdu03041
]
Complex C
Other components
EJC/TREX
CD36_40290
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CD36_40290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
8047515
NCBI-ProteinID:
XP_002419701
UniProt:
B9WF97
LinkDB
All DBs
Position
4:complement(join(42185..43263,43330..43552))
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AA seq
433 aa
AA seq
DB search
MSHEGQEELLDYSDSEEIAVSTTTQASGEGQSNDKESDKKGSYVGIHATGFRDFLLKPEL
LRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEIST
LVICHTRELAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKDTCPHIVVATPG
RLHALVEEKAIRLNNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQD
IRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNRKLSDLLDSLEFNQVIIFV
KSTRRANELNKLLCACNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGRGIDIE
RINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSFVSSKEDEEVLEKIQSRFDVKITEF
PEEGVDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaaggtcaagaagagttattagattattcagattctgaagaaattgctgtt
tcaaccaccactcaagcttctggtgaaggccaatctaatgataaagaaagtgataagaaa
ggatcttatgttggaatccatgccactggtttcagagactttttattgaaaccagaatta
ttgagagcaattggggattgtgggtttgaacatccttctgaagtccaacaagtttgtatt
cctcaatccattttgggaactgatgttttgtgtcaggccaagtctggtttgggtaaaact
gctgtttttgtattgtcaacattgcagcaattagatccagttccaggtgaaatttccact
ttggttatttgtcataccagagaattggcctatcaaatccgtaatgaatatgccagattt
tccaagtacatgcctgatgttaaaactgatgtgttctatggtggtaccccaattaagagg
gatattgaaaaattgaagaacaaagatacttgtccacatattgtagtggcaactccaggt
agattacatgctttggttgaggagaaagccatcagattgaacaatgtcaagtcgtttgtt
attgatgagtgtgacaaagttttagagtccattgacatgagaagagatgtgcaagacatt
ttccgtgcaactcctcatcaaaagcaagttatgatgttttccgccacattatctcaagat
atccgtcctgtttgtaaaaaattcatgcaaaacccattggaaatttatgttgatgacgag
gctaagttgaccttacatggtttgcaacaatactacataaaattggatgagaaagagaag
aatagaaaattatctgatttgttggattccttggaattcaaccaagtcattattttcgtc
aagtccaccagaagagcaaacgaattgaacaaattgttatgtgcttgtaacttcccatcg
attgctgtgcattctggtttgccacaagaagaaagaattgaaagatatagatctttcaaa
gaattcaataagagaatctgtgtttcaactgatgtttttggtagaggtattgatattgag
agaatcaatttggccattaactatgacttgccaaacgaagccgatcaatacttgcataga
gttggtagagctggtagatttggtaccaaggggttagctgtttcttttgtctcttccaag
gaggacgaagaagtcttggaaaagattcaaagcagatttgatgttaaaattactgagttc
ccagaagaaggtgttgatccatcaacttatatgaacacttga
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