Candida dubliniensis: CD36_43580
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Entry
CD36_43580 CDS
T01140
Name
(RefSeq) exosome complex exonuclease rrp42 (ribosomal rna processing protein 42)
KO
K12589
exosome complex component RRP42
Organism
cdu
Candida dubliniensis
Pathway
cdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD36_43580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_43580
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CD36_43580
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CD36_43580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
8047850
NCBI-ProteinID:
XP_002420016
UniProt:
B9WG62
LinkDB
All DBs
Position
4:complement(825733..826647)
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AA seq
304 aa
AA seq
DB search
MVQLSPAEKSYLYDSLTQQPIIRPDLRSIHQYRPLVAKTSFLPGSNGSARVRTEDGSECI
VSVKSKVVLISEEEEEKNQSQNLIEVDIDIVGHRDDSNYVANLKFQLTNLLQQNFPFEVL
KLTSRYTFKLYIDCIIISHSCYPLSLISLTNYLALKTTRLPLLISDVNDEEIAELPTFSD
DWENAKLIQDYHLNDTKEGQPSKFQPPIFITIGVIGKNLIFDPSFEEEQVLENGLIISFY
NNKVITPISNTNFAVNSNNSNFKGLDQSLLIQSLALCNKYCPNIIRALDSLIEEDNDDND
GSIF
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggttcaactatcaccagcagaaaagtcatatttatatgattcattaactcaacaacca
ataataagacctgatttacgatcaattcatcaatatcgtcctttagttgcgaaaacttca
ttcttaccaggatctaatggatcagctcgggtaagaactgaagatggtagtgaatgtatt
gtaagtgtcaaatcaaaagtagtattgattctggaagaagaagaagaaaaaaaccaatca
cagaatctaattgaagtggatattgatattgtgggacatcgtgatgattcaaattatgtt
gccaatttaaaattccaattaaccaatttattacaacaaaatttcccatttgaagtttta
aaattgacgagccggtatacatttaaactatatattgattgtattataataagtcattca
tgttatccattaagtttaatttcattaaccaattatttagctttgaaaactacgagattg
ccattattaattagtgatgttaatgatgaagaaattgctgaattacctacatttagtgat
gactgggaaaatgctaaattaatacaagattatcatttaaatgataccaaagaggggcaa
ccaagtaagttccaaccaccaattttcattactattggagtcattgggaaaaatttaatt
tttgatccatcatttgaagaagaacaagttttagaaaatggattaattataagcttttat
aataataaagtgattactccaatttcaaatactaattttgctgttaattccaataattca
aatttcaaaggattagatcaatcattattgattcaatcattggcattatgcaataaatat
tgtccgaatattataagagcattagatagtttaatagaagaagataatgatgataatgac
ggttctatattctaa
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