Candida dubliniensis: CD36_44510
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Entry
CD36_44510 CDS
T01140
Name
(RefSeq) topoisomerase II-associated deadenylation-dependent mRNA-decapping factor, putative
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cdu
Candida dubliniensis
Pathway
cdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD36_44510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_44510
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CD36_44510
mRNA degradation factors
5'-3' decay
Decapping complex
CD36_44510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
8047935
NCBI-ProteinID:
XP_002420103
UniProt:
B9WGE9
LinkDB
All DBs
Position
4:complement(1088052..1090379)
Genome browser
AA seq
775 aa
AA seq
DB search
MSFFGFDPAAPPQGANQKDDVYDFENTYDGLGELQEDDAFNQETFGTSTSEIRKDFEFSQ
GESQQSESYAKASAPPAQTISYAQAATVPVNDDEFMQELWGSSNAPSKNHTDSTEEKTAG
GQSEKKILSLEEIEAQLTAIDPSQQPPLPQQQFPPQPYGVPGMMPPPPQFGYMMAPGFMP
PQYPYPGMIPQQMPPMQQGQFPPPQPQQQQQQQQQQPQPQQQQQTAGPVDKQVSEGPARS
PASKKTQKVDLSNFPVLGSKEAQSHQQSTPQQQVQSQQQRHHHHYNQHYQHGHQREPSQE
LTPEQQEKAARRQEKVSRIMKYSGIMNPKDKDFVTRFQLSQIVTEDPYNEDFYAQVFKVI
HPKTINGAQQSTQQNNSIAQAYLDHSGHRLGGRYKRADVALQRMQQQVQKAVTVAKERPK
LTQYAKEGALGKISFGSGKKPRQQLEIISKAAERQKQENQIGKKEGVKHYSKKDILSILE
NIIGELMNVESESRTRADVDTSKLWESLKVLEQSSSSGDEESEVNPFIQCLNYNKMLKIL
LRLFKFLTREQILTIVTLIMSNLENLLVIKNGSYTTYPNKKVPENIVKLVEAYTLTFSKV
LMNAVLDFKFNEIIGLLVILIEHNNVSFVSTTKIGLSILTTLLSRAELIIGEGSISATDL
SEWSSCYDELFTSLESRIAAIFPPNPEDVDDGSSGENYIWQFLATLSLGGKLSHQRIIVD
EVRDEIFCVMNRAKAIANTDMANLYKKQNLLNNLNMYLVVMGLVADETEIKELQQ
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttttgggtttgatccagcagctcctcctcaaggagccaatcaaaaagatgat
gtttacgactttgagaatacttatgatgggttaggtgaattacaggaagatgatgctttc
aatcaagaaacatttggaactagtaccagtgaaattagaaaagattttgaatttagtcaa
ggagagtctcaacaatctgagtcatatgcaaaggcctcggcacctcctgcccaaactatt
agttatgcccaggcagcaacagttccagtaaatgatgatgagtttatgcaagaattatgg
ggatcatctaatgcaccaagcaagaaccatactgactccactgaagaaaagacagcaggt
ggtcaatctgagaaaaagattttgtctttagaagaaattgaggcccaattaactgcaatt
gatccttctcaacaaccacctcttcctcagcaacaatttcctcctcaaccttatggggtt
ccaggaatgatgcctccacctccacaatttgggtacatgatggcgccaggatttatgcca
cctcagtatccttatcccggtatgattccacaacaaatgccacctatgcagcaaggtcaa
tttccacctccgcaaccacagcagcaacagcaacagcaacagcaacaacctcaacctcaa
caacaacaacagaccgcaggtcctgtagataaacaagtttcagaaggtcctgctcgttct
ccagcttccaagaagacacaaaaagtggatttgtctaatttcccagttttaggatcaaag
gaggcacaatcgcatcaacagagcactccccagcaacaagtgcaactgcaacagcaacgc
catcatcatcattataatcaacattatcaacatggtcaccagcgtgagcctctgcaagag
cttacaccagaacaacaagaaaaagctgctagaagacaagaaaaagtttctcgaatcatg
aaatactcggggattatgaatcctaaagataaagattttgtgaccagatttcaattatct
caaattgttactgaagatccttataacgaagatttttatgctcaagttttcaaagttatt
catccaaagacaattaatggtgctcaacaatctactcaacaaaacaattctattgctcaa
gcttacttggatcatagtggtcatagattaggtggacgttataaaagagctgatgttgct
ttacaaagaatgcaacagcaagttcaaaaagcagttactgttgctaaagaaagacccaag
ttgactcaatatgccaaagagggagctcttggtaagatttcttttggtagtggtaaaaaa
ccaagacaacaattggaaattatcagtaaagctgctgagagacaaaagcaggaaaaccaa
attggcaagaaagaaggggttaagcattatagcaaaaaagacattttaagtatattagag
aatattattggtgaattaatgaatgttgaaagtgaatcaagaacccgagctgatgttgat
actagtaaattatgggagtcattgaaagtattggaacaatcgtcatcatccggtgatgaa
gaaagtgaagtcaacccattcattcaatgtttgaactataacaaaatgttaaagattttg
cttcgtcttttcaagtttttaactagagaacaaatattaactattgtaacattaatcatg
tctaatttagaaaatttgttagtgatcaagaatggatcatatactacgtatcctaacaag
aaagtaccagaaaatattgtcaaattggttgaagcttatactttaacattttcaaaagtg
ttgatgaatgcagtattggatttcaaatttaatgaaatcattggattattagttatttta
attgagcacaataatgtttcatttgtgtctaccaccaagattgggttatctatattgaca
acattgttatcacgtgcagaattaatcattggtgaaggatcgatatcggccactgattta
tcggaatggtcatcatgttatgatgaattgtttacatcattagaatcgagaattgctgct
attttcccacccaatcctgaagatgttgatgatggttcttctggggaaaactatatatgg
caatttttagccacattatcgttgggtggtaaattgagtcatcaaagaattattgttgat
gaagtacgtgatgaaattttttgtgtgatgaatcgagctaaagccattgccaacactgat
atggctaatttgtataagaaacagaatttgttgaataatttgaatatgtatttggttgtt
atggggttggtagcagatgagacggaaatcaaagaacttcaacaatag
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