Candida dubliniensis: CD36_46570
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Entry
CD36_46570 CDS
T01140
Name
(RefSeq) pre-mRNA-splicing helicase, putative
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cdu
Candida dubliniensis
Pathway
cdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CD36_46570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cdu03041
]
CD36_46570
Enzymes [BR:
cdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CD36_46570
Spliceosome [BR:
cdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CD36_46570
Complex C
U5 SnRNP specific factors
CD36_46570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
Helicase_PWI
BRR2_plug
nSTAND3
AAA_22
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
8047805
NCBI-ProteinID:
XP_002420297
UniProt:
B9WF65
LinkDB
All DBs
Position
4:complement(1603553..1609510)
Genome browser
AA seq
1985 aa
AA seq
DB search
MSNNVIRQKRDRNHDEEVPASSMSGRISKSDMGSNYKSSQPPAPSRKDPELEPVDDQSFE
LFVTKIRSYLPDASHEVIQSASEVASEQLSNRDMSVPEKRKELEELLNISISDGDLHELI
NLSNSIESAKQQQQQQQEEDVGDEFVAINFNSSDDEGEEQVIEPEIEVAEDKEETNTVVI
EEEPHKYPKIHDWDWFQECLESKNQPQIFDLLANKDMDSIQLDNQLNELLDYKEMDFIVK
CIEHRWRIVFSKRLQTENKESVVKEMEELGLYSLIDELDRKRSLDDESSNPLKRQKKVKR
ALQKISLDKISFSASVDNARVTLPEGTTHEVKKSYDTITVPPPVQSLTDNDELLPISTLP
DWAQEAFPRNETTTFNRIQSKIYSQAFETDNNLLICAPTGAGKTNVAMLTVLRTIENFRH
NGHIQLKNFKIVYIAPLKALVQEQMREFQRRLTATYGIVVNELTGDSSLSKQQIAETQII
VTTPEKWDIITRKDPSYVKLVKLVIIDEIHLLHDERGPVLESLVSRAIRKSETTGFDIRI
VGLSATLPNYADVAKFIRAKPEGLFYFDASYRPCPLEQVYIGVKEQKAIKRIAAMNEACY
DRMYQSLQDHHQLIIFVHSRKETFTTAKYLMEKLDIDIVEQEGVKEILKQESESMSNSKL
KEVIPQGFGIHHAGLTKQDRSTVEDLFAQGHLRVLVSTATLAWGVNLPAHTVIIKGTETY
SPESGTWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQDEVQYYLAILNQQLPIESQLI
HKLVDNISAEVVSGSITTIEEGIEWLSYTYFFVRMLRSPALYGVEATYDFKIDPTLYNRR
ADLIYTAFCILHENKLIVYNAALGSVASTELGKIASHFYINFETINLYGKMLKPWHTESD
ILSVFSNSGEFKYVPVRQEERLEISKLMEKCPIPIKEQPNEPLAKINILLQTFISRLSLE
GYALIADMIYITQSAGRLLRALYEIALLQKWSSLAKSILNLCKMVDKRLWLNNSPLRQFG
DAVPQQIIRASEMSHLPWIRYFHLNTEELAVALNLKGNAQVAKQYIDSFPKVSIQYMVQP
ITDQFLRIQIEVIPEWSWISAIHGSQEIFNVFLEGCDGNRLLHSEQFIVKRKNINKPHIL
EFFVPFVSPHLPNYILSFVSEKWVHCTWKSSIMLSDVISPKVSPHYLDNKVDLVPTETVG
ELFPFTHFNKLQSSTFDAIYNSETNVFIGSSKGDGKTVLAELAILNHWANHKGRIVYINP
CQELVDKLFKKWSTFFSSFEKEINVLSGNLREDLTTVNQTQLVLATPEQFNCLSKRWKTR
KAFRSIDLFIWDDLHLVGSDVHYEMLVTRVRMLTSQWDDYALRIIGLSSPVLNSRDIAEW
IGVAKSETYNFAPLSRENKITEIKLSVDNPVKIYKDLAKVNSGLQNTIIFAPSYNHAFEM
AHAMLENNQAQEWRAVDLLKLEKYISKIQNPLLKNLLPKGIAVFYSGMSRVDRLIVERLF
ESKSIGVLFCTVDTCKFAPVANNVFVAGTRIYDGHEHRFLDYPLNDLYEMLGCCQDGGVV
HIYTTSQMVEFYSSLLNSGLAVESLLPNSLHEFFMDAAANGIIKQRQNCIDVLTFTFFYR
RLLKNPSFYDLKEVSNNGISTYLSELIESVFDDFNKEEFIEEEEEGDIISPLNKIVIASH
YNSTFETISNLSKLSNKSKLKDIFHALTNATEFSYLPVREDDDALLLKLQTKLPIKYSQD
DYESPFFKAFILLQAHISRVSVPSDLKQDQKSVLNRILPILNAAIDLLSSDGSLNVLLAM
DLSQMIVQAVWSSDNPLKQVPCFSNEILARCTQHNVETVYDIMSLEDEERDEILQLPDEQ
LNEVASFVNSYPNIELSYEMKGEVTSNASKFVTVTVERDEEMDSLEVVKNENFPPVKQEN
WWIVVGDSKTRHLYGIKKVNIQKMSQSFEIEFTIPNKGKHELTIYLICDSYLDADKEMEF
VIDVV
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacaatgttatacgacagaagagagatcgaaaccatgacgaagaggttcctgcg
tcctctatgagtggcagaatatcaaagagtgatatgggaagcaattacaaatcgtcacaa
ccaccagccccatcacgaaaagacccagaattagaaccagtagatgaccaatcctttgaa
ctattcgtgacaaaaatacggtcctatttacctgatgctagtcacgaagtaattcaatcg
gcttcagaagtggccagtgaacaattgagcaaccgtgacatgtctgttccagaaaagaga
aaagaacttgaagaactattgaatatatctatatctgatggcgatcttcatgagttgatt
aatttatccaactcaattgaatctgccaaacagcaacaacaacaacaacaagaagaagat
gttggtgacgaatttgttgccatcaactttaattcatcagatgacgagggcgaggaacaa
gttattgaaccagagattgaagttgcagaagataaagaagaaacaaacacggtcgttatt
gaagaagaaccacacaaatatcccaaaatacatgactgggattggtttcaagaatgtttg
gaactgaaaaaccagccacagatatttgatcttttggctaataaagatatggatctgata
cagttagataaccagctcaacgagttgttggactataaagagatggattttattgtcaaa
tgcatagagcatcgatggcgtattgtgttttccaaaagattgcaaactgaaaacaaagag
tccgttgtgaaggaaatggaagagcttggtctttattctttaatcgacgagttggaccga
aaaaggctgctagatgatgagagtagcaacccccttaaacgacagaaaaaggtaaaacga
gcacttcaaaagattagccttgacaagatttcgttttctgccagtgttgacaatgcccgt
gtgactttacccgaaggtacaactcacgaagttaaaaagtcatatgatactatcacagtt
ccaccaccagttcagtccttgactgacaatgatgaattgttgcccatatctacacttcca
gattgggctcaagaagctttccctagaaatgaaaccaccacatttaacaggattcaatca
aaaatatattcacaggcatttgaaactgacaataacttattaatttgtgctcccactggt
gccggaaaaacaaatgtggcaatgttgactgtactacgcaccattgaaaactttcgccac
aatggccacattcaattgaaaaactttaaaattgtatatattgctccgttaaaggcactt
gtacaagaacaaatgcgtgaattccaaagacggcttacagctacttatgggattgttgtt
aatgagttgaccggtgacctgtctttgtcgaaacagcaaattgcagaaacccagatcatt
gtcacaactccagaaaaatgggatatcataacccgaaaggatccaagctatgtgaaattg
gtcaaactcgtaatcatagatgaaatccatttattgcacgacgaaagaggtcccgttttg
gaaagtttggtgagtcgggctataagaaaatccgagactactggattcgacatcagaata
gtggggctttctgccactttaccaaattatgctgatgttgcaaagtttatccgagccaaa
cctgaagggttattttattttgatgctagttacaggccatgcccattggaacaagtatac
atcggggtaaaagaacaaaaggccattaaaagaattgctgccatgaatgaagcatgctac
gacagaatgtatcaaagtctacaggatcatcatcaacttattatttttgttcactccaga
aaagaaacgttcaccacggcaaaatacttgatggagaaattagatattgacattgttgaa
caagaaggtgtaaaagaaatattaaagcaggaaagcgagtcaatgtctaattctaaatta
aaagaggtcatccctcaaggatttgggatccaccatgctggtttgactaaacaagataga
agtacagttgaagacttgtttgctcaaggtcacttgcgtgtccttgtttctacggctact
ttggcatggggtgttaaccttccagcacacactgtgattattaaaggtacagaaacgtat
tcgccagagagtgggacctgggtccaattgtcacctcaggatatcctacaaatgttggga
cgtgctggtagaccaagatacgataagaacggtgaagggattataatcacatctcaagac
gaagttcagtattacttggctattttgaatcaacaattaccgattgaatcacaattgatt
cataaattggtagacaatatcagtgcagaagttgtttctggatcaattactaccatcgaa
gaaggaatagagtggttgagttacacctacttttttgtgagaatgttgcggtcgccggca
ttgtacggtgttgaagcaacatatgatttcaaaattgacccaacgctttacaacagaaga
gcagacttgatatatactgcattttgcatattgcatgaaaacaagttgattgtttataac
gctgcattgggatcagtcgcctcaactgagttgggtaaaattgcatcacatttttatatc
aattttgaaacaataaatctatatgggaagatgctaaaaccatggcacactgaaagcgac
attttgagcgtgttctcaaattcaggtgaattcaaatatgtgcctgtgagacaagaagag
aggttggaaattagcaagttgatggagaaatgccctatccctattaaagaacagcccaat
gaaccacttgccaaaattaacatactattgcagacttttatttctcgattgagccttgaa
gggtatgctttgattgctgatatgatatacattacgcaatcggcagggagattgctaaga
gcgttgtatgaaatagccttgttgcaaaaatggtcatccttagccaaaagtatccttaat
ttgtgcaaaatggtagataaacgattgtggttaaacaattcgcctttgagacaatttggt
gacgcggtcccgcaacaaatcatcagagcatcagagatgtcacatttgccatggattaga
tatttccatttaaacacagaagagcttgctgttgcattaaatctaaagggaaatgcccaa
gttgccaaacaatatatcgattctttcccaaaggtatcgatccaatatatggttcaacca
atcacagaccagtttctacgcatacagattgaagtgattccagaatggtcttggattctg
gctattcatggaagccaagagatttttaatgtttttttggaaggctgtgatgggaatagg
ctcttgcatagcgaacagtttattgtaaagcgcaaaaatatcaataaaccacatattttg
gagttctttgttccctttgtttcaccacatttgcccaattatatcctatcgtttgtcagt
gaaaaatgggtacattgcacttggaaaagctctattatgttgtctgacgtgatttctccc
aaagtgtcacctcattatttggataacaaagtggatttggtacctacagaaacggtgggg
gagttgtttccatttactcatttcaacaaattgcagtcgtcgacgtttgatgcaatctat
aatagcgaaactaatgtttttattggctcttccaaaggtgacgggaaaacagttttagcg
gagttggctatattgaatcattgggctaaccataaaggcagaatagtatatattaaccca
tgccaggaacttgttgataaattgttcaaaaaatggtccacgttttttctgtcgttcgag
aaagaaatcaacgtgctaagcggtaatttgcgtgaggatttgaccactgtgaatcaaact
cagttggttttggccacacctgaacaatttaactgtttatcaaagcgttggaaaactaga
aaggccttccgatctattgatttatttatctgggatgacttgcatttagttggttcagat
gttcactacgagatgctcgtcacaagagttcgtatgctaacttcacagtgggacgattat
gcactaagaattattggtttatcgagccctgtattaaacagtcgtgatattgcagagtgg
ataggagtggcaaaactggaaacctacaattttgctccgcttagtcgcgaaaacaaaatt
acagaaattaaactcagtgttgacaacccagttaaaatttacaaggatttggctaaagtg
aatagtggtttgcagaacacaatcatttttgccccatcatataaccatgccttcgaaatg
gcacatgctatgctcgaaaataaccaagcacaagaatggagagcagttgatttattgaaa
ttggaaaagtatatcctgaaaattcagaatccattattgaaaaacttgttacccaaaggg
attgccgtgttctattcaggaatgtcgcgggttgatagactaattgtggagagattattt
gaatccaagtctattggagtattattttgcactgtggatacttgcaagtttgcaccagtt
gcaaataatgtatttgttgctggaacgaggatatatgatgggcatgagcatcgattcctt
gattacccgctcaatgatttgtatgagatgttaggctgttgtcaagatggtggagtagta
catatctatacaacttcgcagatggttgaattctacagctcgcttttaaatctggggctt
gcggtggagagcttgctcccaaactcattgcacgaattttttatggacgctgctgccaat
ggtattattaagcaaagacagaattgtattgatgtcttgacattcacgtttttttatcga
agattgcttaagaatccaagtttttatgatttgaaagaagtttcaaataatgggatctca
acctatttgtcggaattgatagaaagtgtttttgatgatttcaacaaagaagaatttatc
gaagaagaggaagaaggcgatattattagcccattaaataaaattgttattgcatcgcat
tacaacagtacttttgaaacgatatctaacttgagcaagcttagcaataaaagtaaattg
aaagatattttccatgcattaacaaatgcaaccgagtttagttacttaccagtacgcgaa
gatgacgacgcattgttgctaaaacttcaaaccaaactaccaatcaaatatagtcaagat
gattatgaatcgccttttttcaaagcttttatactattacaggcacacatatcacgagtc
agcgttccactggacttgaagcaagatcaaaagtcagttttgaataggattttgccaatt
ttaaatgctgctatagatttgttgtccagtgatggttcattgaatgttttattggctatg
gatttgtcacagatgatagtccaggcagtgtggagttcggataacccattaaagcaagtt
ccatgctttagcaatgaaattttagctagatgcactcagcataacgtagaaacggtatat
gatataatgtcattggaagacgaagaacgagacgaaatattgcagttgcctgatgaacaa
ttgaatgaagttgcttcatttgtgaatctgtatcctaatattgagttgctgtatgaaatg
aagggtgaggttacttctaacgcctcaaaatttgttactgttactgttgagagagatgaa
gagatggattcattagaggttgtcaaaaatgaaaattttcctcctgtcaagcaagagaac
tggtggattgttgttggtgatagtaagactcgtcatttgtatggcataaagaaagtcaat
attcaaaagatgagccaatctttcgaaattgaatttactatcccaaacaaaggtaagcat
gaattaacaatttatttgatttgtgattcgtacctagacgccgataaagaaatggaattt
gttatcgatgtagtatag
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