Candida dubliniensis: CD36_52600
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Entry
CD36_52600 CDS
T01140
Name
(RefSeq) U6 snRNA-associated Sm-like protein, putative
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cdu
Candida dubliniensis
Pathway
cdu03018
RNA degradation
cdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CD36_52600
09123 Folding, sorting and degradation
03018 RNA degradation
CD36_52600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_52600
03041 Spliceosome [BR:
cdu03041
]
CD36_52600
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CD36_52600
mRNA degradation factors
5'-3' decay
Lsm complex
CD36_52600
Spliceosome [BR:
cdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CD36_52600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Gemin6
Bet_v_1
DUF150_C
Motif
Other DBs
NCBI-GeneID:
8048439
NCBI-ProteinID:
XP_002420563
UniProt:
B9WHK0
LinkDB
All DBs
Position
5:join(651064..651091,651162..651442)
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AA seq
102 aa
AA seq
DB search
MSELSSFLEKRVHVITSDARFFEGKLEGYDKSTNIILSNCIERIIYSKDDEGEENEEISL
GVYIMRGNEIVCVGEIDDELYKSINWETLKGHALKTTKNSLK
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaactaagttcatttttagaaaagagagtgcatgtgataacatcagatgctagg
tttttcgaagggaaattagaaggatatgataaatcaacaaacataatactaagtaattgt
attgaaagaatcatttactccaaagatgatgaaggagaggaaaatgaagaaatatcattg
ggagtttatataatgcgtggtaatgaaattgtatgtgtgggagaaatagacgatgagtta
tacaagtcgatcaattgggaaacattaaaaggtcatgctttgaaaactacgaaaaattca
ttaaaataa
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