Candida dubliniensis: CD36_62050
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Entry
CD36_62050 CDS
T01140
Name
(RefSeq) mRNA 3' end processing factor, putative
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cdu
Candida dubliniensis
Pathway
cdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CD36_62050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdu03021
]
CD36_62050
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_62050
Transcription machinery [BR:
cdu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CD36_62050
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CD36_62050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pfc11_Clp1_ID
Pcf11_C
CID
zf_PCFS4
Birna_RdRp_C
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
8048620
NCBI-ProteinID:
XP_002420969
UniProt:
B9WIQ7
LinkDB
All DBs
Position
6:complement(408976..410550)
Genome browser
AA seq
524 aa
AA seq
DB search
MTDILEAYQQGLSELTFNSRPIIDNLTVIAKENPNVADGIIDLITQRIYKTIPDQKLFAL
YLLDSICKTIGSPYNILAGNGIFNLYSHVFQLVNETIRNKLVNLFETWKISKTRGTNDPL
FPKTQLDKIESFLKKAGYPKPKTNSGAMSQQSLVNDINQLIPIFENKVRTNPNSKLQDRL
KALNQLRLILSSQVMKANELQAIQNQLQNIKEQEISSSSSSASKGGTPIPTPGPTPATTP
GLSSIPSVPKVNPAFMIFNDLVLSGLVKKDQEPIPGSKPVYSLVFPQNKYVPSAGGLGSN
STLEDLLLSSSSIQRSDYDKLKFTEMVKVSKSSFNNLQDFIKNNKPTTKLRDLLYESKPS
KCSICGKRFASDKEGADKKRLHLDWHFRINKKLSNKGSNVQSRNWYLDDYEWVHFNENDL
LEYSTDVKIPDIIQDTDDTVSTESQYVIVPSTETNMNNKCLICREQIKATYNDEIGEWCW
YNCIRQPGEPRNSRKIVHVSCFNESRKKRARDHDLLPHNKREKF
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacagacatcttggaagcataccagcaaggtttgtctgaattaacatttaattcacga
ccaataattgataacttaactgtgatagcaaaagagaatcctaatgttgccgatggaatc
atcgatttaataacccaacgaatttataaaactattccagatcaaaaattattcgcattg
tatttactagattctatatgcaaaactattggcagtccttataatatattagctggaaat
gggatttttaatttgtattctcatgtatttcaattagtcaacgagacaattcgtaataag
ttggtgaatttgttcgaaacatggaagatatccaaaacaagaggtacgaatgatcctttg
ttccccaagacacaattagataaaatagaatcatttttgaaaaaagcaggatacccaaag
cccaaaacaaactcaggtgcaatgtctcaacaatccctagtgaatgacattaaccaattg
attcctatttttgaaaataaagtacggactaatccaaactcaaagttacaagatagactc
aaggcattaaatcaattaaggttaattctttctagtcaggtaatgaaagctaatgaatta
caggctatccaaaaccaattacaaaacataaaggagcaagaaatatcatcgtcatcatcc
tctgcatcgaaaggtggcacccctattcctactccaggaccaacacctgccactacaccg
ggactctcatcaattccatctgtgcctaaagtgaacccagcatttatgatattcaatgat
ttagtcctttcgggattggtcaaaaaggatcaagagccgattcctggctctaaaccagtt
tactcgttggtgtttccacagaataaatatgtgccatcagcaggtggtctcggctctaat
agtactttagaagatttattgttatctagtagttcaatacaaagatctgattatgataaa
ttgaagtttacggaaatggttaaggttagtaaatcgtctttcaacaacttgcaagatttt
attaaaaataataaaccaacaacaaaattgcgtgatttgctttacgaatccaaaccatcc
aagtgttcaatttgtggtaaaagatttgcatctgataaggaaggagcagataaaaagaga
ttacatttagattggcattttagaatcaataagaagctctccaataaaggtagcaacgtt
caatctcgaaattggtatctagatgattacgaatgggttcattttaatgaaaatgatcta
ttagaatactcaactgatgtaaaaataccagatattatccaggacacggatgacactgtt
tcaactgagagtcaatacgtgattgtcccttcaacagaaacaaatatgaataataaatgt
ttaatctgtcgcgaacaaattaaggctacctacaatgatgaaatcggagaatggtgttgg
tataactgtattcgacaacctggagagcctagaaacagtaggaaaattgttcatgtctct
tgttttaatgaatccaggaagaagagagcacgagatcatgatttgctccctcacaacaaa
cgagagaagttttaa
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