Candida dubliniensis: CD36_72250
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Entry
CD36_72250 CDS
T01140
Name
(RefSeq) U6 snRNA-associated Sm-like protein, putative
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cdu
Candida dubliniensis
Pathway
cdu03018
RNA degradation
cdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CD36_72250
09123 Folding, sorting and degradation
03018 RNA degradation
CD36_72250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdu03019
]
CD36_72250
03041 Spliceosome [BR:
cdu03041
]
CD36_72250
Messenger RNA biogenesis [BR:
cdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CD36_72250
mRNA degradation factors
5'-3' decay
Lsm complex
CD36_72250
Spliceosome [BR:
cdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CD36_72250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF8153
Motif
Other DBs
NCBI-GeneID:
8048992
NCBI-ProteinID:
XP_002421443
UniProt:
B9WKC8
LinkDB
All DBs
Position
7:join(547233..547235,547349..547792)
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AA seq
148 aa
AA seq
DB search
MLPLYLLTAAKNKPILIELKSGQIYNGYLTNCDSWMNLTLHNVIQIDSLNGTKEGEGEGE
GERDNKEKENVFLKLSEIYIRGIHIKYLRIPDDIMKYAKEQNMINMENRNRYQKRRGVGG
GVGAGGINDSRRFNNNRQQGHGHNYGRR
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgctcccattatatttattaactgcagcaaaaaataaaccaatattaattgaattaaaa
tcaggacaaatttataatggatatttaactaattgtgattcatggatgaatttaacatta
cataatgttatacaaattgattcattaaatggaacaaaagaaggagaaggagaaggagaa
ggagaaagagacaataaagaaaaagaaaatgtttttttgaaattactggaaatatatatt
agaggaattcatattaaatatttaagaattcctgatgatattatgaaatatgctaaagaa
caaaatatgataaatatggaaaatagaaatcgataccaaaaaagaagaggtgtaggagga
ggagtaggagcaggagggataaatgattcaagaagatttaataataataggcaacaaggg
catggacataattatggacgtagatga
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