Corynebacterium durum: CDUR_07660
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Entry
CDUR_07660 CDS
T09347
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdur
Corynebacterium durum
Brite
KEGG Orthology (KO) [BR:
cdur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdur03019
]
CDUR_07660 (hrpB2)
Enzymes [BR:
cdur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDUR_07660 (hrpB2)
Messenger RNA biogenesis [BR:
cdur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDUR_07660 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
ResIII
NACHT
ABC_tran
TsaE
PhoH
SLFN-g3_helicase
CBM13-like
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
WJY85260
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All DBs
Position
1620276..1624196
Genome browser
AA seq
1306 aa
AA seq
DB search
MNTTTDTPLKKDLYPLLDDVSLRDARTFRRRLSKARSSSALAAIAQDINAARASLAAKKA
NLPVVTYPDSLPVSARRDDIAQAIMENQVVIIAGETGSGKTTQIPKICLELGRGVRGMIG
HTQPRRLAARTVAERIANELGQDVGNSIGYAIRFDDRVSPMTAIKLMTDGILLAEMQKDR
FLNAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRSDLKVIITSATIDPERFARHFSDSDG
KPAPIIEVSGRTYPVEIRYRPLQQSLGDSIIDVDPLDGLCDALIELIHEGPGDILCFFAG
EREIRDALEVIKAKKWRDIEVVPLYGRLSNQEQHRVFRSHRGRRIVLATNIAETSLTVPG
IRYVVDTGTARISRYSTRTKVQHLPVENISQASAHQRSGRCGRVADGIAIRLYSEEDFLT
RAEFTDPEILRTNLASVILRMASLRLGDIADFPFVEAPDQRSIRDGLLLLHELGALNDGE
HNGAPKLSDVGKQLARIPVDPRMARMLIEAQQLGCLHNVIVIVAALTIQDVRERPLDFQA
QADQAHARFKDSSSDFLSYLKLWDYILRTRRELSGNAFRRRMKQEFLHYMRIREWRDLVQ
QLEQVAQDLGWLTRNSVSADNNGDAIHQALLTGLLSHIGSRNGESKEFSGARGTHFMVFP
GSSLAKKPPYFIMAAELVHTSRLWARDCAEIEPEWVEKAASSLLRHQYSEPHWSSKRAAA
MAHQKSTLFGVTIVADRIVPYHRVDPGIARDLFIRHALVEGEWNTHHAFFHKNMEKLQSA
SELEDKARRRDIVVDEQTLFDFYDARIPSSVTTGRHFDSWWKKRQRTEPTLLDFDPSKLV
SDTHNVSEVAFPDVWRQGNVEYELSYRFEPGTPDDGVTVRIPMPLLAGLTPRGFDWLVPG
LRKELVTELIRTLPKPLRRTVVPASDFAARALPQLHPYQGDNDSETTLTSQLADALRTLG
GHGINASDFQLSQLPPHLRMSFAAVDKRGDIIDRDKDLTALQERQAEKVTSSVGRVAGSS
GSSVVEAWTNDTLGAIDEEVITTVDGQKVVAYPALAVTPQGVSIQVLPTKAAADASMMTA
TLTLLMRDITVSVQRMLNGLPLKQRVAVEHYPHGGAAGLVDDARVTAIRDAMLEAGGPAR
SPDEFEQLRATIAPTVPATVRQIIVQLAPALADYHNVVEELKRWSGDAIDDMTAQLEFLL
PPHAISVHGMSHLKHLPRYLQAMLIRLEDMETHPDRDADNQDIIADVTDYIRQRLAQLPS
SRAKSREVKNVWWMVEELRVSLFAQRLGTAHAVSERRIQKAVDKLR
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaccactgacacaccacttaaaaaagatctttacccgctgttagacgacgtc
tctttacgcgacgctcgcacgttccgccgccgacttagcaaggcacgctcatcatccgcg
ctagccgccatcgctcaggacatcaacgctgcacgcgcttccttagccgcaaaaaaggca
aatttaccagtagttacatacccggattcgctcccagtgagtgcgagacgcgatgacatc
gctcaggcaatcatggagaatcaagtggttattatcgccggtgaaactggttcgggaaaa
actacgcaaattccgaaaatctgcctagaactcggacgaggtgtccgcggcatgattgga
cacacgcaacctcgacgactagccgcccgtaccgtcgcagagcgaatcgcaaacgagctg
ggacaagatgttggaaatagcattggctatgccattcgcttcgatgatcgtgtttcccct
atgactgcaattaagctcatgactgacggcattttgctggcggaaatgcaaaaagatcga
tttttgaatgcctacgacaccattatcattgatgaagcccatgaacgttcattgaacatc
gatttcctactaggatacctcaaacagttacttcctcgacgctccgatctcaaagttatc
atcacgtcggcaaccattgaccccgagcgatttgcccgacactttagcgatagtgacgga
aaacctgctcccattattgaagtgtctggacgtacatatcccgtagaaattcgttaccgt
ccacttcagcagagccttggtgattccatcattgatgttgatccgctagatggtttatgt
gacgccctgattgagctcatacacgagggaccaggcgacattctgtgcttcttcgccggg
gaacgtgaaattcgtgatgcacttgaagtgattaaagcaaaaaagtggcgtgacatcgag
gttgttccgctgtatggacgattgtccaaccaggaacaacaccgtgtttttcggtcgcat
cgaggtcggaggattgtcctggcaacaaacattgcagagacctcccttaccgtccctggc
atccgttatgtggtggatactggcacagcgcgcatttcccgttactcaacccgcacaaaa
gttcagcatcttcccgtagaaaatatctctcaagccagcgcacatcaacgttcagggcgc
tgcggccgcgtggcggacggcattgcgattcgcctgtactcggaagaggattttctgact
cgagcggaatttactgatccagaaattcttcgcacgaaccttgccagcgtgattttgcgc
atggcatcactgcgccttggggatatagcagatttcccatttgtagaggcgccggatcag
cgttctattcgtgacggtttgctgctgcttcacgagttgggggcgttgaacgacggcgag
cacaatggggcaccgaaactgagcgacgtcggcaagcaattggcgcgtattcctgtcgat
ccacgcatggctcgaatgcttattgaggcacaacaactggggtgtctacataacgtgata
gtgattgtcgccgcgctgaccattcaagatgtaagggaacggccacttgatttccaagca
caggccgatcaagcgcacgcccgcttcaaggattcgagcagtgattttctgagttatctg
aaactgtgggactatattttacgcactcgccgtgagctgagcggtaatgcttttcgtcgt
cgcatgaagcaggaatttctgcactatatgcgcattagagagtggcgtgatttggtgcag
caactggaacaggtggcacaagatcttggttggctgacccgtaatagcgtctccgcagat
aacaatggtgatgcgatacatcaggcgctgctgaccgggttgttgtcgcatattggctca
cgcaatggcgagtctaaggaattttcgggtgcacggggaacgcattttatggtctttccg
ggttcgtcattagcaaaaaagccgccttattttatcatggccgcagaactagtacataca
tcacggctgtgggctcgggactgtgctgaaatcgagccagaatgggtagaaaaagcagct
tcatccctgttacgtcatcagtattcggaaccacattggtcatcaaaaagagcggcagcg
atggctcatcaaaaatctaccttgtttggcgtcaccattgtggccgatcgtattgtccct
tatcatcgagtcgatccaggcatagcgcgtgacttatttatacggcacgcactggttgaa
ggtgaatggaacacccatcatgcctttttccacaaaaacatggaaaagttgcagtctgcc
tccgaattagaggataaagcccggcggcgcgacatcgtggtagatgagcaaactctcttt
gatttttacgacgcccgtataccttcgtccgtgaccactggtcgtcactttgatagttgg
tggaaaaagagacagcgtaccgaaccaacactccttgactttgatccatccaagcttgtc
agtgacactcataatgtgtctgaggtcgcttttcccgatgtttggcggcagggcaatgtg
gagtatgaacttagttatcgatttgaaccaggaaccccagacgatggtgtgacagttcgt
attcccatgccacttctggcgggtttaacaccccgcggatttgattggttggttcctggt
ttacgcaaagagctggttacggaactcattaggactcttccgaagccgctgcgccgcaca
gttgtaccggcctccgattttgccgcacgagcgctcccacaactgcacccctaccagggg
gacaacgattcagagaccacactcaccagccaacttgccgacgccctgcgcaccctcggt
ggccatggaatcaatgcttctgacttccagttgtcacaactgccccctcatcttcgaatg
tcatttgcagctgtggacaaacgtggcgacatcattgatcgtgacaaagacctcaccgct
ttacaggaacgtcaagccgagaaagtcacctcatcagttggtcgcgtggctggctcctcc
gggtcctcggtggtcgaagcatggacaaacgacactctcggggcaatcgatgaggaggtt
atcactacggtagatgggcaaaaagtagtggcctacccggcattagcggtcacacctcag
ggtgtgagtatccaggtgcttccgaccaaagccgctgcagatgcttcaatgatgacggcc
acgctgacgctactcatgcgggacattactgtgagcgtgcaacgaatgctaaatggtctc
cctttgaaacaacgagtggcggtagagcactacccccatgggggtgcagctggcctcgtt
gatgatgcccgggtgacagcaatccgagatgccatgttggaagctggtggaccagcacga
tcaccagacgagtttgaacagctacgcgctaccatcgcgccaacagttccagcaacggtg
agacagattattgtccaactagcaccagcactggcggactatcacaatgtcgttgaagaa
ctaaaacgctggtcaggcgatgccattgatgacatgactgcccagctggagtttttactt
ccgcctcatgccatttctgtccatggcatgtcacacctcaagcatcttccccgctacctg
caggcaatgctcattcggttagaggacatggagacccacccagaccgtgatgccgataac
caggacattatcgcggacgtgacagactatatacgccagcgtctggcacaactaccgtct
tccagagcaaagtcccgggaggtcaaaaacgtgtggtggatggtggaggaactcagagtg
agtttgttcgcgcagcgccttggcaccgcccatgcagtgtccgaacgcaggatacagaaa
gcggtggacaagcttcgctag
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