Entry |
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Name |
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KO |
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Organism |
cdx Corynebacterium deserti
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cdx00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CDES_04105
09124 Replication and repair
03420 Nucleotide excision repair
CDES_04105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cdx03021]
CDES_04105
03400 DNA repair and recombination proteins [BR:cdx03400]
CDES_04105
Enzymes [BR:cdx01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDES_04105
Transcription machinery [BR:cdx03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CDES_04105
DNA repair and recombination proteins [BR:cdx03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CDES_04105
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SSDB |
|
Motif |
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Other DBs |
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LinkDB |
|
Position |
complement(838482..840179)
|
AA seq |
565 aa
MAFGDGPLIVQSDKTVLLEVDHPLAGEARIALAPFAELERAPEHIHTYRITPLALWNARA
AGHDAEQVVDMLERYSRFPVPQPLLIDVAETMSRYGRVRLHRHPAHGLVLESAEPAILVE
ISRHKKIKPMLGAQIDPETIVVHPSERGRLKQELLKVGWPAEDLAGYVDGESHPIALSTD
VEDWSLRDYQQMAADSFWEGGSGVVVLPCGAGKTMVGAASMAKAQSTTLILVTNTVAGRQ
WKDELLRRTTLTEDEIGEYSGERKEIRPVTIATYQVVTRRTKGEYKALELFDSRDWGLII
YDEVHLLPAPVFRMTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLESQG
FIATADCVEIRSTMTDSERMVYATAEASDRYRLAATAHTKVAVVRKVVERHHGQPTLIIG
AYLDQLEELGKEFDAPIIDGKTSNKKREALFDQFRSGELSILVVSKVANFSIDLPEASVA
IQVSGTFGSRQEEAQRLGRLLRPKHDGGEAHFYSIVSRDTLDTEYAAHRQRFLAEQGYAY
RIMDADDLLFPMPGTITETITKKDQ |
NT seq |
1698 nt +upstreamnt +downstreamnt
gtggcatttggagatggacctctaatcgtccaatccgacaaaactgtcctgctggaagtt
gatcacccgttggcaggtgaagcacgcatcgctttggcaccgttcgccgagctcgagcgt
gcacctgagcacatccacacctaccgcatcaccccgcttgcgctgtggaatgctcgggca
gctggacacgacgccgagcaggtagtagacatgctggaacgctactcgcgtttccccgta
ccgcaacccctgcttatcgacgtcgccgaaacaatgtccaggtatggacgtgttcgcctc
caccgccaccccgcccacggcctcgtcctggaatcagcagaacctgccatcctcgtggag
atctcccgtcacaagaagatcaagccgatgctgggcgctcagatcgatcccgagaccatc
gttgtccatccttctgagcgcgggcgcctcaagcaggagcttctcaaagtgggttggcct
gcagaagacctcgcaggatacgtagacggtgaatcacaccccattgctttgtccaccgac
gttgaagactggtcactgcgcgattaccaacaaatggccgctgattccttctgggaaggc
ggatccggcgtcgtggtacttccctgcggagcaggtaaaaccatggttggtgctgcatcg
atggccaaagctcaatccacaaccctgatcctggtcaccaacactgtggctggccgccaa
tggaaagacgaacttcttcgtcgcaccacacttaccgaagacgaaatcggcgagtactcc
ggcgaacgcaaagaaatccgccccgtcaccatcgccacctaccaagtagtcaccaggcgg
accaaaggcgaatacaaagcccttgagcttttcgattcccgcgactggggccttatcatc
tacgacgaagtacatcttctccccgcccctgttttccgcatgacctcagatctgcaatcc
aggcgccgacttggccttaccgcaaccctcgtacgcgaagatggccgagaaggcgacgtt
tttagcctcattggcccaaagcgttacgacgctccctggaaagacctcgaatctcagggc
tttatcgccaccgctgattgcgtagagatccgctccaccatgacagactccgaacgcatg
gtgtacgccaccgctgaggcctcagatcgctaccgccttgccgccaccgctcacacaaaa
gtggccgttgtacgcaaggtggtggaacgccaccacggccaaccaacgctgattatcggc
gcatatctcgaccaattggaagagctcggcaaagaattcgacgccccaattatcgacgga
aaaacctccaacaagaaacgcgaggcacttttcgatcaattccgttccggcgagctctcc
atcctagtggtctcaaaggtggcgaacttctccatcgacttgcccgaagcctcagtagca
atccaagtctctggcacctttggcagccggcaggaagaagcccagcgattgggtcgtctc
ctgcgccccaagcacgacggtggagaagcacacttttactccatcgtcagccgagacacc
ctcgacacggagtacgcagcccaccgccaacgattccttgcagaacagggctacgcttac
cgcatcatggacgctgacgatctgctcttccccatgccgggaactattactgaaactatt
actaagaaagaccaataa |