Corynebacterium deserti: CDES_08615
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Entry
CDES_08615 CDS
T04068
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdx
Corynebacterium deserti
Brite
KEGG Orthology (KO) [BR:
cdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdx03019
]
CDES_08615 (hrpA)
Enzymes [BR:
cdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDES_08615 (hrpA)
Messenger RNA biogenesis [BR:
cdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDES_08615 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
NACHT
ResIII
AAA_23
AAA_16
AAA_25
T2SSE
ABC_tran
TsaE
PhoH
SLFN-g3_helicase
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ALC06115
UniProt:
A0A0M4CGJ9
LinkDB
All DBs
Position
1758558..1762466
Genome browser
AA seq
1302 aa
AA seq
DB search
MTTSETTPSKASLYELLNGVSLSDERAFRRRLAKARAPKALAAIKADIDKARLLIDEKTQ
LIPPIIYPDSLPVSARRDDIAEAISNNQVVIIAGETGSGKTTQIPKICLELGRGRRGLIG
HTQPRRLAARTVAERIADELDQEVGQSVGYAIRFDDRVSSRTAVKLMTDGILLAEMQRDR
FLNAYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIDPERFAEHFSDASG
KPAPIIEVSGRTFPVEVRYRPLEVIQGDKVVDIDPLDGLCFALEELMAEGPGDILCFFAG
ESDIRDAMEAIEARSWKGVEVTPLFGRLSNQEQHRVFSPHSGRRIVLSTNIAETSLTVPG
IHYVVDTGTARISRYSVRTKVQRLPIEPVSQASANQRSGRCGRVADGIAIRLYSEDDFLS
RPEFTDPEILRTNLASVILRMASLRLGDINDFPFVQPPEQRAIRDGLLLLHELGALTDDT
NSDGSPQLTSIGRDLANIPVDPRMARMLVEANALGCLHSVMVIVAALTIQDVRERPLEFQ
AQADQAHARFKDTTSDFLGFLKLWDYIADQRQQGSGNSFRKQMKKEFLHYMRIREWWDLV
RQLEQIGQQLGWAKKENVAGTASPDIIHQSLLSGLLSQIGSRDGESREFSGARGTKFLIF
PGSSLSKKPPQFVMAGQLVETSRLWARDVAKIEPEWVEKLAGPLLKHQYSEPYWSSKRGA
AMVHRKSTLYGVTIVADKVVPYHTVDPQAARDMFIRNALIAGDWNTHHRFFHDNVAKLEA
IGELEAKARRRDIIVDEETLFDFYDAKLPDNATNSRNFDSWWKKTSRKTPDLLDFDPDKL
INEDADAVTEEAFPDRWIKGSLVFDLSYHFEPGHRDDGVTVKIPIPVLGGLDTEGFDWLV
PGVRLDLVTELIRTLPKALRRTVVPAPEFAKRALPMLRPYMTTLTSQLADVLHTLGGQGI
NASDFDPSKLPDHLRISYAAVDRRGKIIDRDRDLEALKTRRANQIKASVSSVAKDAEHDE
ASAWTSDSLGFVEEEVETTVDGQSVTAYPALVVTPTGVSIKVMPTKAAADASMITATLTL
LMREIEVSTKQMVKGLPLQQRVAVDNYPHGGAEGLVADARVAAIRDLMFEHGGAVRSPEE
FSVLLEKVKAETPGAVRRIVVDLAPALVQYASVVSELDAWSGPAIDDMLSQLDFLLPKQT
ISIHGISRLRNLPRYLHAISIRLEEMNQNTDRDADRQDTVTMVENELEKQLSKLPAQRRN
SKEAKDVAWQIQELRVSLFAQRLGTPRPVSPQRIQKAIAKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgactacatctgaaactacgcctagcaaggcttccctgtacgaacttctcaacggcgtc
tcgctgtccgacgagcgcgcctttaggcgtcgcctcgccaaggcccgtgcccctaaagcc
cttgccgcgattaaggcagacatcgataaggcacgcctgcttatcgacgaaaaaacccag
cttatcccacctatcatctatcctgactccctccctgtcagtgcacgacgcgatgacatc
gcagaggcaattagcaataatcaagtggtgatcattgctggtgaaacaggctccggcaaa
acaactcagatccccaagatctgtttggaactcggccgaggccgacgtggcttgattggc
catactcagccccgacgtttggcggcacgcaccgtcgcagagcgcatcgctgacgagctt
gatcaagaagttggccagtctgtcggttatgcgattcgtttcgatgaccgcgtttcttcc
aggacggccgtcaaactcatgacggacggtattttgcttgcagaaatgcagcgcgatcgt
ttcctcaacgcctatgacaccatcatcatcgatgaggcacacgagcggtctcttaatatt
gacttccttttgggttaccttcgccagcttctgcccaaacgccccgatctcaaagtgatc
attacctcggcaacgatcgatcccgaacgattcgccgagcacttttccgatgcctccggt
aagcccgctcccatcattgaggtctcaggccgcaccttccccgttgaagttcgctaccgc
cctctcgaagttatccaaggtgacaaagttgtagacatcgaccctcttgatggcttgtgc
tttgctttggaagaactcatggccgaaggtccgggcgacattttgtgcttctttgccggc
gaaagcgatatccgtgacgccatggaagcaatcgaagcccgtagctggaaaggcgttgag
gtcacgccgctctttggtcgcctttccaaccaagaacagcaccgtgtgttttctccgcac
tctggccgacgcattgtcttgtccaccaacatcgccgaaacctcattgactgtccccgga
attcactatgttgttgataccggcaccgcacgtatctccaggtactccgtgcgcacaaaa
gttcagcgtctccctatcgagcctgtctcccaagcaagcgccaaccagcgatccggccga
tgtggtcgtgtcgccgacggtattgccatccgactgtattccgaggacgatttcctctca
cgtccagagttcaccgatccagaaattctgcgcacgaacttggccagcgtcattttgcgc
atggcctcacttcgcctcggtgacatcaatgatttcccgtttgtccaaccacctgagcaa
cgagcaatccgtgatggcctccttctcctgcacgaactcggtgcgcttactgacgacaca
aactcagatggatccccacagctcacttcgattggtcgcgacctcgccaacattcccgtg
gatccccgaatggctcgcatgcttgtcgaagccaacgccctcggctgcctccattccgtc
atggtcattgtcgcagcacttactatccaagacgtccgcgaacgacccctggaatttcaa
gctcaagcagaccaagcccacgcacgtttcaaagacaccacctcagatttcctggggttt
ctaaaactgtgggattacatcgccgatcaacgccaacaaggcagtggaaattctttccga
aagcagatgaagaaggaattcctccactacatgcgtatccgcgagtggtgggaccttgtc
cgccagctcgagcaaattggccagcaattgggctgggccaagaaagagaacgtcgctggc
accgcaagcccggacatcatccatcaatcattactgtccggcttgttatcgcaaatcgga
tcccgcgatggcgaaagccgcgaattctctggcgcacgaggaaccaagttcttgatcttt
ccgggttcttcgctgtccaagaaaccacctcaattcgtcatggcgggccaactcgttgag
acctctcgactctgggcacgagacgttgcaaaaattgaacctgaatgggtagaaaaactc
gcaggacccctgctcaagcaccaatactctgagccttattggtcgtcgaaacgcggtgct
gccatggtgcaccgcaagtccaccctctacggggtgaccatcgttgccgataaggtggtt
ccctaccacacggtcgatcctcaagccgcccgtgacatgtttatccgaaacgcactcatt
gccggagattggaacacccaccaccgcttcttccacgacaacgtggccaagctggaggca
atcggtgaacttgaagcaaaggctcgtcgacgcgacatcattgtcgatgaagagaccctg
tttgatttctacgatgccaagcttccagacaacgccaccaacagccgtaacttcgattcc
tggtggaagaaaacctcacggaagacccctgatctcctcgacttcgatcccgacaagctc
atcaatgaagacgccgatgccgtcaccgaggaagccttccccgaccgatggatcaaaggc
agcctcgtcttcgatttgagctaccactttgaaccaggtcaccgcgatgacggcgtcacc
gttaagattcctattcctgtcctaggtggcctcgacaccgaaggcttcgattggcttgtt
ccaggcgtgcgccttgaccttgtcactgagctgatccgcacattacccaaggctttacga
cgcaccgttgtccccgcccccgaattcgccaaacgtgccctaccgatgcttcgcccttac
atgaccacactgacttctcagttggcggacgttcttcacaccctgggtggccaaggcatt
aacgcatccgatttcgatccgtccaagctgcccgatcacctccgcatctcctatgctgca
gtcgatcgtcgggggaagattattgaccgtgaccgtgatttggaggcattgaaaactcga
cgagccaaccaaatcaaggcttcagtctccagcgttgcaaaagatgctgaacacgacgaa
gcctcagcatggacttccgacagcctcggatttgtcgaagaagaagtcgagaccactgtg
gatggccaatccgttaccgcctacccggcgttggtggttactccaactggtgtgtccatc
aaggtcatgcccaccaaagctgcggctgatgcttccatgattaccgcgactctcacgtta
ctcatgcgtgaaatcgaggtctccaccaaacaaatggtcaagggcctacccttgcaacag
cgtgttgcggtagataactaccctcatggcggtgctgaaggtctcgttgccgatgcgaga
gtagctgcgatccgcgatttgatgtttgaacatggtggtgctgttcgctcgcctgaggaa
ttcagtgtgcttttggaaaaggtgaaagctgaaacacctggtgctgttcgtcgcatcgtg
gttgatcttgcgcctgccctcgtgcagtatgcttcagtggtttctgaactcgatgcgtgg
tctggccctgcgattgacgatatgctttcgcagctagacttcctccttcctaaacagacc
atcagcattcatgggatcagccgcttgcgtaatctcccccgctatcttcatgccatctcg
attcgcttggaggaaatgaatcagaatactgatcgagatgcggatcgccaagacacagtc
acgatggttgaaaatgagttagaaaagcagttgagcaagcttccagctcagcgacgtaat
tctaaagaggcgaaagacgtagcctggcaaatccaggaattgcgtgtcagcttgtttgcc
cagcggttgggaaccccccgtccggtgtcaccacaacgcattcagaaggcgatcgcgaaa
ttgcgctaa
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