Corynebacterium deserti: CDES_10765
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Entry
CDES_10765 CDS
T04068
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdx
Corynebacterium deserti
Pathway
cdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDES_10765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdx03019
]
CDES_10765
03009 Ribosome biogenesis [BR:
cdx03009
]
CDES_10765
Enzymes [BR:
cdx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CDES_10765
Messenger RNA biogenesis [BR:
cdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDES_10765
Ribosome biogenesis [BR:
cdx03009
]
Prokaryotic type
rRNA processing factors
CDES_10765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALC06528
UniProt:
A0A0M4CEX4
LinkDB
All DBs
Position
complement(2224477..2227665)
Genome browser
AA seq
1062 aa
AA seq
DB search
MSEISPSAVLAAEFDRESLGEKTRVHQLAKKLGLASKDLVVALDGLGLVKVAQSNLSKAE
VEKLLDVLAQPVRDAQPSAVPDLEPVERIRRRVEKNVANEIHQIEEKVERELASAQPNDF
EAAVKEEAEAELLEDVVPEITPAPAEAPVYTPIFVAPAVVSAEETTENVEDTDDEQARER
STRKRRGRRGTGRGRGVEVAKEPETPEVEEVTEPVGIKGSTRLEAKRRRQSEMREENKKR
RHVVSTQEFLERRESMERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQTSMVG
NIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAGLGGRGRRIEQALKAGDQVLV
QVSKDPLGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPGPERKRLKEILGRVVPAQG
GTIIRTAAEGVSEKNIAADVNRLHTLWEQIKERTDKEKKSRGSKPVTMYEEPDMLVKVIR
DLFNEDFTSLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFDRADYDGKDAFEAFDLNSQLE
EALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKGGGNLEETVTLNNIEAAEEIVRQM
RLRDLGGMIVVDFIDMVLPENQELVLRRLKEALENDRTRHQVSEVTSLGLVQMTRKRIGP
GLLETFSTPCEHCEGRGIIVHEDPVDNVDQRVEAKAEERSRRHQKSQETTHDGSRDDSAN
SKKAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLDDTDVDELVDGIVNDDLDSPER
ILAESTVEPEEGPRRRARRRKQNESSASSASDISAIAAAAVDIANDEDPDEPSGSSYVSD
LDNDSVADSLVDSSAEYDAEYDKAVAEFEASPRRRRKTRGNSRSDFAPKPQDFKPAQEEG
PRRRRGRKADAQQVVAAKVGAEVGAEVVADVASEEPKQSTPRRNRPSEVSSGAPSRSRRR
AVRRRFADPEVEQQIIEESAPAEVSAHEAVNAPSVESADGRRRRRRAVRVLSSGAENPQK
ASGATAPKAESAVSSNAGGKKETNPGRRRRATRRSPRSSTRG
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaaatttctccctcggcagtattggctgcagaatttgatagagaatccctcggg
gaaaaaactcgcgtccaccagctcgcaaaaaagctggggttggcatcaaaagacctggtt
gttgccctcgacggcctgggattggtcaaggtagcgcagtccaacctgagcaaggctgag
gtagaaaagcttctcgacgtcctcgcgcagccagtgcgcgatgcccagccatctgccgtg
cccgacctggaaccagtggagcgaatccgccgccgggttgagaaaaacgtggccaatgaa
atccaccagatcgaggaaaaagtcgagcgtgagctcgcctctgcgcagccaaacgatttt
gaggccgcagtaaaggaagaagctgaggcagagctgctggaagatgtggttccagaaatc
accccagcgcccgctgaagcaccggtgtacacgccgatctttgtcgcgcctgcagtggtg
tcggctgaagaaaccaccgaaaatgtcgaggacaccgatgatgagcaggctcgcgagcgc
tcaacacgcaagcgccgtggacgtcgcggcaccggtcgtggccgtggggtggaagtagcc
aaagagcccgaaacccctgaggtggaagaggtcaccgagcccgtcggaattaagggttcc
acccgtttggaagccaagcgtcgccgtcaatcagagatgcgagaagaaaataaaaagcgt
cgccatgtggtgagcacccaagaatttttggagcgccgcgaatccatggaacgccgcatg
atcgtgcgcgaacgccagcgccatgatcacccaggcctggtcacccaggttggtgtcctg
gaagatgatcagctggtggaacaatttgttacctctgatgcacagacctccatggtgggc
aatatctaccttggtcgtgtgcaaaatgtgctgcccagcatggaagcagccttcattgac
atcggaaaaggccgcaatggtgtcctctacgctggcgaagtggattggaaagccgctggt
cttggtggccgtggccgccgcatcgaacaggccctcaaagctggtgaccaggtgctcgtg
caggtatccaaggatccccttggacacaagggtgcacgcctgaccacccaaatttccctg
gctggacgctaccttgtctacgttccaggtggccgaagcgcgggcatttcccgcaagctt
cctggaccagagcgcaagcgcctcaaggaaatccttggacgtgttgtccctgcacagggt
ggcactatcatccgcaccgcagcggaaggtgtgtctgaaaagaacatcgcagccgatgtt
aaccgcctgcacaccctgtgggagcagattaaagaacgtaccgacaaggaaaagaaatcc
cgcggctccaagcccgtgaccatgtatgaagaaccagacatgctggtcaaggtgattcgc
gacctcttcaacgaagatttcacctccctcatcgtcgacggcgaccgcgcctggaacacc
gtgcgtgcctacattcaatccgttgcacctgacctggtgtcccgcgttgagcattttgat
cgcgcagattacgacggcaaggatgccttcgaagcattcgacctcaacagccagctagaa
gaagcactgtcccgcaaggtgaacctgccttccggtggttcgttgatcatcgaccgcacc
gaagccatgaccgtcatcgacgtcaacaccggacgctacaccggtaagggtggcggcaac
ctggaggaaaccgtcaccctcaacaacattgaggctgccgaagaaatcgtccgccaaatg
cgtctacgtgacctcggtgggatgatcgttgtcgacttcatcgacatggttctacccgaa
aaccaagagctcgtcctgcgccgcctcaaggaagccctggaaaacgaccgcacccgccac
caggtctccgaagtgacctcacttggtctcgttcagatgacccgcaaacgtatcggtccc
ggcctgctggaaacattctccaccccatgtgagcactgtgaaggccgaggcatcattgtt
cacgaagacccagtggacaatgtcgaccagcgggtagaagccaaggccgaggaacgttcc
cgtcgccatcagaagagccaggaaactactcatgatggttctcgtgatgattctgcgaac
tccaaaaaagccgccgaacaccccatggttgttgccatgcgtgaccttgtggaaagcgac
gagcacgacctcgaccaggaatttgaagagctcgctgcctcagtcattgtcctagatgac
accgacgttgatgaacttgttgacggcatcgtcaacgacgatctcgattctccagagcgt
atcctcgccgaatccaccgttgagccagaagaaggacctcgtaggcgtgcacgtcgacgc
aagcaaaatgagagctcggcttcgtctgcttctgacatttccgccatcgccgctgctgca
gttgatattgccaacgacgaagacccagatgaaccatccggatcatcctatgtgtctgac
ctggataacgattctgtcgctgattctttggttgattcttccgcagaatatgacgcggaa
tatgacaaagccgttgcagagtttgaggcaagccctcgccgccgacgcaagacccgtggc
aactcacgatctgattttgcgccaaagccacaagatttcaagcctgcacaggaagaaggg
cctcgtcgacgtcgtggacgtaaagcggatgctcagcaggtcgtcgctgcaaaggtcggc
gcagaggtcggcgcagaggtcgttgctgacgtagcttcagaggagccgaagcagtctacg
cctcgtcgcaaccgtccaagcgaagtgagctctggtgcgccatcgcgttcacgtcgccgt
gcagttcgtcgtcgctttgcggacccagaagtagagcagcagatcattgaagaatctgca
cctgcggaggtttctgctcacgaagccgtgaacgcgccttccgtcgagagtgctgatggt
cgtcgcaggcgtcgtcgtgcagttcgcgtcttgtcatcaggggcagagaatcctcagaag
gcaagcggtgcgacagcaccgaaagctgaatctgccgtgtcctccaacgctggaggtaag
aaggaaaccaaccctggacgtcgccgacgcgccactcgacgctctccacgatcttccaca
cgagggtag
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