Clostridium diolis: F3K33_00890
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Entry
F3K33_00890 CDS
T06237
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdy
Clostridium diolis
Pathway
cdy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F3K33_00890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdy03021
]
F3K33_00890 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdy03400
]
F3K33_00890 (rpoC)
Enzymes [BR:
cdy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F3K33_00890 (rpoC)
Transcription machinery [BR:
cdy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F3K33_00890 (rpoC)
DNA repair and recombination proteins [BR:
cdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F3K33_00890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
SHOCT
Motif
Other DBs
NCBI-ProteinID:
QES71448
LinkDB
All DBs
Position
181867..185403
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDAIQIGLASPEQIRQWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYIVIDPKETPLLKKQLLNEKEYREAVDKYGDESFVAGMGAEAIQDLL
NEIDLVTSSKELKEELKQSSGQKKVRIIRRLEVVESFRKSGNDPQWMVINVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMAIELFKPFVMKKLVQDGIAHNIKSAKRMVERVLPQVWDVLEEVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHLPLSVEAQAEARFLMLAATNI
LKPSDGKPVCVPTQDMILGSYYLTMDKNGAKGDGMTFSSKDEAIMAYEVKEIDIHAQINV
RMFREIDGVVKSKIIKTTVGKIIFNESIPQNLGLINRENEEDMFNLEVDFLATKKSLGTI
IDQCYMKHGPVKTSIMLDNIKALGYHYSSIGAVTVASSDIIVPKVKYDLLKEADETIEKI
EKMYKRGFISDEERYERVIEKWTQTTEDVANALMDSLDKFNPIYMMADSGARGSKSQIKQ
LAGMRGLMASPSGKIIELPIRASFKEGLDVIEYFLSTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTDEGIFVSEIKEGNEVIEELRERLIGRYTAEDIVDPKTGDIVHP
KNEYMDPYAADKIVSAGIKKVKIRSVFTCKCKVGVCARCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEIAGTARIEET
KKKRTVIIMGADGEERSYDIPFGSRLRVNESDYIEAGDEITEGSVNPHDIMSIKGIDGAR
RYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKIVDSGDTELLPGTMIDMFDFYEENA
RVREFGGEEAKGEQTLLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKEN
VIIGKLIPAGTGMMRYRSLKVETDSELVEETIGETVEE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcaatacaaattggcttagcatctccagaacaaata
agacaatggtcaagaggagaagttaagaaaccagaaactattaactatagaactttaaaa
ccagagagagatggtttattctgcgaaagaatttttggaccaatgaaagattgggaatgt
cactgtggaaagtacaaaagagtaagatataaagggatagtttgtgatagatgtggagtt
gaagtcacaaaagctaaagtgagaagagaaagaatggggcatatagaattagctgcccca
gtatctcatatttggtactttaaaggaattccatcaagaatgggattgattttagatatg
tcgccaagagctttggaaaaagttttatactttgcatcttatatagtgatagatccgaag
gaaacaccactattgaagaagcagcttcttaatgaaaaggaatatagagaagctgtagat
aaatatggagatgaaagctttgtagcaggcatgggagctgaagcaattcaagatttacta
aatgaaattgatttagtaacttcttcaaaagaacttaaagaagaattaaagcaaagttcg
ggacaaaagaaagttagaattattagaagactagaagttgtagaatcgtttagaaaatca
ggcaatgatccacagtggatggtcataaatgtgataccagtaataccaccagatttaaga
cctatggttcaattagatggaggaagatttgcgacatctgatttaaatgatttatataga
agagtaataaacagaaataacagattaaagaagttattagatttaggtgctccagatata
attgtgagaaatgaaaaaagaatgcttcaagaggcagtagatgcacttattgataatggt
agaagaggaagaccagtaactggacctggaaatagacctttaaaatctctttcagatatg
ttaaaaggtaaacaaggtagatttagacaaaacttacttggtaagagagttgactactca
ggtagatcagttatcgttgttggtccagaattaaaaatgtatcaatgcggacttcctaag
gaaatggcaatagaattatttaaaccatttgttatgaaaaagcttgtacaagatggaata
gctcataatataaagagcgccaagagaatggttgaaagagtattaccacaagtatgggat
gtattggaagaggtaattgcagatcatccagtattacttaaccgtgcacctacattgcac
agacttggtattcaagcattccaacctgtattagtagaaggtagagcaataaaacttcat
ccgttagcatgtacagcttataacgctgactttgatggggaccaaatggctgtccatctt
ccattgtcagtagaagctcaagcagaagctagattcttaatgctagctgcaacaaatatt
ttgaagccatcagatggtaaaccagtttgtgttccaacacaagatatgattcttggatca
tactatttaaccatggataagaatggtgcaaaaggggatggaatgacattctcaagcaaa
gatgaagctataatggcatatgaagttaaagaaattgatatacatgctcaaataaatgtt
agaatgtttagagaaattgatggtgtagttaagtctaagataattaaaactacagttgga
aagattatatttaatgaatcaattccgcaaaacttgggattaatcaatagagaaaatgaa
gaagatatgttcaatttagaagttgatttcttagctacgaaaaagtcattaggaacgata
atcgatcaatgttacatgaagcatggtccggttaaaacatctataatgcttgataatatt
aaagcattagggtatcattattcatcaatcggcgctgtaacagttgcttcatcagatata
atagttccaaaagtgaaatatgatttacttaaggaagcagatgaaacgatcgaaaagatt
gaaaagatgtataagagaggtttcatatctgatgaagaaagatatgaaagagttatagaa
aaatggactcagacaactgaagatgtagccaatgcattaatggatagtcttgataaattt
aatccgatatatatgatggctgattctggagccagaggatcaaaatctcagattaagcaa
ttagctggtatgagaggtcttatggccagtccgtcaggtaagattatagagttgcctata
agagcatcatttaaagaaggattagatgtaatagaatatttcttgtctactcatggagct
agaaaaggtaatgcagatacagcgttaaagacggcggattctggatatttaactagaaga
cttgttgacgtttctcaagatgttattgtaagagaagaagattgtggtacagatgaagga
atatttgtaagtgaaattaaagaaggtaatgaagttatcgaagaattaagagaaagatta
attggtagatatacagcagaagatattgttgatccaaaaactggtgatatagtacatcca
aaaaatgaatatatggatccgtatgcagctgacaagatagtttcagcaggaattaagaaa
gtaaaaattagatctgtgttcacttgcaaatgtaaagttggtgtgtgtgctagatgttat
ggtatgaatatggcaacagctaaaaagattgatattggagaagctgttggaataatagca
gcacaatcaattggagaaccaggtacacagcttacaatgagaacattccataccggtgga
gttgcaggagcagatatcactcaaggtttacctagagttgaagaactatttgaagctaga
aagccaaaagggcttgcaatagtaagtgaaattgctggtactgcgagaatagaagagacg
aagaagaagagaacagtaataattatgggtgctgatggagaagaacgtagttacgatata
ccttttggatcaagattgagagtcaatgaaagtgattatattgaagctggtgatgaaatt
acagaaggttcagtaaatcctcatgatataatgagcataaaaggaatagatggagcaaga
agatatttactttcggaggttcaaaaggtttatagactacaaggtgttgatatcaatgat
aaacacttagaagtagttgttagacaaatgactagaaagataaaaattgttgactcggga
gatacagaattattaccaggaactatgattgatatgtttgatttctatgaagaaaatgct
agagtaagagaatttggtggagaagaagcaaaaggagaacaaactctactaggtataact
aaggcagcattagcaactgatagttttctatcagcagcttcgttccaagaaacgacaaga
gttctaacagaagcagcaattaaaggaaaagttgatcctttagttggattaaaagaaaat
gtaataattggtaagcttattccagctggtactggaatgatgagatatagatctttaaag
gtggaaacagatagtgaattggttgaagaaactattggagaaactgttgaagaataa
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