Clostridium diolis: F3K33_03105
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Entry
F3K33_03105 CDS
T06237
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cdy
Clostridium diolis
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cdy03009
]
F3K33_03105 (rlmD)
Enzymes [BR:
cdy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
F3K33_03105 (rlmD)
Ribosome biogenesis [BR:
cdy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
F3K33_03105 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
Methyltransf_15
N6_N4_Mtase
PrmA
TRAM
Methyltransf_32
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_12
PCMT
Methyltrans_SAM
UPF0020
FtsJ
Ubie_methyltran
Acetyltransf_14
Methyltransf_4
Saf-Nte_pilin
QRPTase_C
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
QES71842
LinkDB
All DBs
Position
629446..630801
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AA seq
451 aa
AA seq
DB search
MKKGSDLSVKIEKLQFPSTGIGYAEDKTIYVKNAFPGQTVTGRVKRKKEDYAELKLISVD
ERADYEIETPCSHFGVCGGCSSQSIPYEKQLEFLSEEVKELFREANVDTGEYLGIQGSPN
QWEYRNKMEFTFGDEAKGEPLSLGMHMRGKSFGILTVDECKLVDEDYRKIIRLTADYFRE
KDLPYYRIMKAEGYLRHLVIRKAQNTGEILVNLVTTTQIDFDLSEYVKLLRNQSYKGNLV
SIIHTENNSKSDAVIPEKVNVLFGKDYIRETLLGLQFNISPFSFFQTNTKGAESLYSIVK
EFMGDSEEKIVFDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAARENAKLNGLNNCEFI
AGDVAEIIKTVKVKPDIIILDPPRTGVHPKALDYVIKFNAPEIIYVSCNPKTLVNDLGVL
TEKGYKVIKTKVKDMFPNTPHVETVVKLIKQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggaagcgatttaagcgttaaaatagaaaagttacaatttccatcgacagga
ataggttatgcagaagataagactatatatgttaagaatgcttttccaggtcaaacagtt
acaggtagggtaaaaaggaagaaagaagattatgcggagttaaaattaataagtgtagat
gaacgagctgattatgagatcgaaactccatgttctcattttggagtttgtggaggctgt
tcatcacaaagtataccatatgaaaaacaattagaatttttaagtgaagaagttaaagaa
ttatttagagaagcaaatgttgacacaggagagtatctaggcattcaaggaagccctaac
caatgggaatatagaaataagatggaatttacatttggtgatgaagccaagggagagcca
ctttcattaggtatgcatatgagaggaaaatcctttggaatattaactgtagatgaatgt
aaacttgttgatgaggattatagaaaaattattagattgactgctgattactttagagag
aaagatttgccttattatagaataatgaaagctgaaggctatttaagacacttagtgata
agaaaagctcaaaatactggcgagatattagttaatttagttactactactcagatagac
tttgatttaagtgaatatgttaaattgctaagaaatcaaagttataaaggaaatttagta
tctataattcatactgaaaataattcgaaatcagatgcagtaataccagaaaaggtaaat
gtgttatttggaaaagattatattagagaaacattactaggattacaatttaatatttct
ccattttcattctttcaaaccaatacaaaaggcgcagaaagcctatattctattgttaaa
gagtttatgggagatagtgaagaaaaaattgtatttgatctctattgtggtacaggaaca
atagggcaaatagtagctccaaatgcaaagaaagtaataggaatagaacttattgaagaa
gcagttgaagctgcaagagaaaatgctaaattaaatggattaaataattgtgaatttata
gctggtgatgtagcagaaataataaaaacagtaaaagttaaaccggatataataatatta
gatccaccaagaactggagtacatcctaaggcgttagattatgtaattaaatttaatgca
ccagagataatatacgtttcctgcaatccaaagacattagttaatgaccttggagtgctt
acggaaaagggatataaagttattaaaactaaagttaaggatatgtttccaaatacacct
cacgttgaaactgtagtgaagctaattaagcaataa
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