Clostridium diolis: F3K33_04640
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Entry
F3K33_04640 CDS
T06237
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cdy
Clostridium diolis
Pathway
cdy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F3K33_04640 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdy03021
]
F3K33_04640 (rpoD)
Transcription machinery [BR:
cdy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F3K33_04640 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_PafC
Exonuc_VII_L
RFC1
Glyoxalase
Motif
Other DBs
NCBI-ProteinID:
QES76121
LinkDB
All DBs
Position
1010880..1012010
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AA seq
376 aa
AA seq
DB search
MTEGGNNKMEQKANGKVTKPKDDKKDKNAKMAAVKELIDKGKKNGSLTYKEIMEAMDHID
LSPEQIEKIYEVLEMTGVEIIGEIADTETEEEIDLSVPEGIAIDDPVRMYLKEIGKVPLL
SSEQEITYAKEIEEGNQKAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV
EKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGR
DPFPEEISKVMELPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAA
FTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALR
KLRHPSRSKKLKDYLD
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaggaggcaataataagatggaacaaaaagcgaatggaaaagtaacaaagcca
aaagacgataaaaaagataaaaatgctaaaatggcggctgtgaaggaattaattgacaag
ggtaaaaagaatggttcactaacatataaagaaatcatggaagctatggatcatattgat
ttgagcccagagcaaatagaaaaaatatatgaagttttggaaatgacaggtgttgaaata
ataggtgaaattgcggatacagaaactgaagaagaaattgatttatcggtcccagaaggt
atagctatagatgatccagttcgaatgtatttgaaagaaattggaaaagtgcctttattg
tcttctgaacaggaaataacttatgcgaaagaaattgaagaaggaaaccaaaaggctaag
aaaaaattagctgaagcgaatttaagattagttgtaagtatagctaaaagatatgttgga
agaggtatgttattcttggatttaattcaagaaggaaatttaggtcttattaaagctgtt
gaaaaatttgattacagaaaaggatataaattttcgacttatgctacatggtggattagg
caagcaataacaagagcaattgcagatcaagctagaacaataagaatacctgttcatatg
gtagaaactataaataagcttattagagtacaaagacaattgctccaagaattaggtaga
gatccattcccagaagaaatctcgaaggttatggaacttccagtggataaggttcgcgaa
attcaaaaaattgcacaagaaccagtttcgttagaaactccaataggtgaagaggaagac
tctcatttaggagactttattccagatgatgaagcaccagcaccagctgaagcagcagca
tttacaatgcttaaggaacaattaatcaatgtcttagatacattaactcctagagaagaa
aaagtattaagattaagatttggacttgatgacggaagagccagaacacttgaagaagta
ggaaaagagttcaatgttactagagaaagaattagacaaattgaagcaaaagctttaaga
aaattaagacatccgtcaagaagcaagaaattaaaagattatctagattag
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