Clostridium diolis: F3K33_06000
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Entry
F3K33_06000 CDS
T06237
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cdy
Clostridium diolis
Pathway
cdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F3K33_06000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdy03019
]
F3K33_06000
Messenger RNA biogenesis [BR:
cdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F3K33_06000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QES72384
LinkDB
All DBs
Position
1321359..1323026
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AA seq
555 aa
AA seq
DB search
MKNERAKIKIIPLGGINEIGKNITAIEYKEDIIIIDCGLKFPDDDMFGIDIVIPDVSYLI
KNSEKIKGIFLTHGHEDHIGALPYVLRQLNVPVYGTKLTLGIVETKLKEHGLLASTELVR
VKPKDIIKLDSVSVEFIKTNHSIADSVAIAVHTPLGVVLHTGDFKIDYTPIDGEMMDFGR
LAELGRKGVLVLMADSTNVERPGYTMTEKVVGETFLRLFSKAKGRLIVATFASNVHRIQQ
IITAAEAYEKKVAVSGRSMENIVQVAIELGYLTVGKDVLVPVDQISKYPNEKIVVITTGS
QGEPMSALARMAASEHRKINVIPGDTVIISATPIPGNEKFVSKVINQLFKKGAQVIYDSQ
EKIHVSGHACQEELKLMQALVKPKFFVPVHGEYRHLKKHGELAMEVGLSEKNLLIPENGD
VIEVARNYIKKNGTVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGILTIVVTIEKQTGRV
VSGPDIISRGFVYVRESEGLMDEAREIVKSVLKTCEEKQITDWATLKSKMRDQLREYLYE
KTKRKPMILPIIMEF
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgaaagagcgaagataaagataattcctcttggtggtataaacgaaatcgga
aaaaatataacagctatagaatataaagaagatattattattatagactgtggactaaaa
tttccggatgatgatatgtttggaatagatattgtaataccagatgtttcatatctaatc
aaaaattcagagaaaatcaaggggatatttttaactcacggacatgaagaccatatagga
gcgttgccgtatgtacttagacaactaaatgttcctgtttatggcactaagcttactctt
ggaatagttgaaacaaaactaaaggaacacggtttgttagcttcaacagagttagtaaga
gtaaagccaaaggatataattaaacttgatagtgtttcagttgaatttataaagactaat
cactcaattgcagattcagttgcaattgcagttcatacaccacttggggtagtacttcat
acaggagattttaagattgattacacaccaattgatggagaaatgatggattttggaaga
ttagctgaacttggaagaaagggagttttagtattaatggcggattcaacaaatgttgaa
agaccaggatatactatgacagaaaaggttgttggcgaaactttcctaagactttttagt
aaggctaagggcaggttaatagttgcaacatttgcatctaatgttcacagaattcagcaa
ataattacagctgctgaagcttatgaaaagaaggtagcagtttcaggaagaagtatggag
aatattgttcaagttgcaatagaacttggatatctcacagttggaaaagatgtacttgtt
ccagtggatcaaatttcaaaatatccaaacgaaaaaattgttgtaataacaactggaagc
cagggggaaccaatgtctgctcttgcaagaatggcagcatcggagcatagaaaaattaat
gtaattccaggcgatacagtaattatttcagcaacacctataccaggtaatgaaaaattt
gtttcaaaagttataaatcaactatttaaaaagggtgctcaagttatatatgattctcag
gaaaagattcacgtttcaggtcatgcatgtcaagaagaacttaaactaatgcaggcttta
gttaaaccaaaattctttgtgccagttcatggtgaatatagacatttaaagaagcatggt
gaattagctatggaagttggactttcagaaaagaatttattaatacctgagaatggtgat
gttatcgaagtagcaagaaattatattaaaaagaatggtactgttgtttcagggcaagtg
tttgttgatggtctcggtgttggagatgtcggaaatattgtcttaagagatagaaaacat
ctttcacaagatggtatattaacaatagtagttacaatagagaaacaaactggaagggtt
gtatccggtccagatataatttcaaggggattcgtctatgttagagaatctgaaggtctt
atggatgaagcaagagaaattgttaaatctgtattaaagacttgtgaagaaaaacagatt
actgactgggctacattaaaatctaagatgagggatcaacttagagagtatctttacgaa
aagactaagaggaaacctatgatattgccaataattatggagttttag
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