Clostridium diolis: F3K33_09035
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Entry
F3K33_09035 CDS
T06237
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdy
Clostridium diolis
Pathway
cdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F3K33_09035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdy03019
]
F3K33_09035
03009 Ribosome biogenesis [BR:
cdy03009
]
F3K33_09035
Enzymes [BR:
cdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F3K33_09035
Messenger RNA biogenesis [BR:
cdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F3K33_09035
Ribosome biogenesis [BR:
cdy03009
]
Prokaryotic type
rRNA helicases
F3K33_09035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_19
Pro-kuma_activ
Motif
Other DBs
NCBI-ProteinID:
QES72962
LinkDB
All DBs
Position
1982820..1984262
Genome browser
AA seq
480 aa
AA seq
DB search
MNNEFTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIP
LCEKVDWNENIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQ
KTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTM
LFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILIIEK
PETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDL
ASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKNKLLSEIEEFI
GFKIPVYNLPEKIMVEKEKNEGVKTLKSKPKRKEEKSKAINNNITKIYLNGGKKKKIRAG
DIVGAICKIEGIRSEDIGIIDVQDSVSYVDILNGKGKRVIEELKNITIKGKIIKAEKAKK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgaattcactaaatttaaaataagtgatgaaatcctaaaatcaatcgaggga
cttggttataaaaatccatcaaaagttcaagaaaaagttatcccagagatacttttgaat
aaagatatcatagttaaatcacaaacgggaagtggaaagacggcagcttttgggattcct
ttatgtgagaaagtggattggaatgaaaatatcccacaaattttagtattaacacctacg
agagaactcgctgttcaagtaagtgaagatataactaatataggaaggtttaaaagaata
aaatctgtttcgatttttggtaaagaacctatctcagagcaggagagaaaattgaaacag
aagacgcatgtagtggttggaactccagggagaattctagatcatatagatagaggaagt
cttaatttagctcaaattaaatattttgttatagatgaggctgatgaaatgcttaatatg
ggatttatagggcaagttgaaggaattattagaagacttccaaagaagaaagttactatg
ttattttcagcaacaataccagaggaaataaaggtattatgtgataaatacatgaataag
cctgtagatataagtattaataatcaaaaacttattaacgaaaatatagatcataattta
tattatactaattatgaagagaagatagaaaaactaaatgatattttaataattgagaaa
cctgaaacagtagttatatttgcaaaaactaaagagaatgtagatacagtgtttcaatgg
ttaaaatctaaggggtactctgttaatagaatacatggaggaatgcttcaaaaagaaaga
ttaagcattatggatggatttagattgggcgattttagaatacttgtatcaacagatcta
gcttcaagaggcattgatgttaaaggaattactcacgtaataaattatgatcttcccgta
gagaaggaagcatatgtacatagaataggccgaacaggaagagcaggggaaaaagggaag
gcaataagcttttgtgttaatgaaaaaaataagcttttaagtgaaattgaagagtttatt
ggattcaaaattcctgtctataatttgcctgagaaaataatggttgaaaaggaaaaaaat
gaaggggttaaaacacttaaaagtaaaccgaaaagaaaagaagaaaaatcaaaagccata
aataacaatataacaaaaatttatttaaatggaggtaaaaaaaagaagattcgtgccgga
gatatagttggggctatttgtaaaatagagggcattagatctgaagatattggaataata
gatgtccaagattcggtatcctatgttgatatattaaatggaaaaggaaaaagagttata
gaagagttaaaaaatataactataaaaggtaaaattattaaagctgaaaaagcaaaaaag
taa
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