Clostridium diolis: F3K33_14880
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Entry
F3K33_14880 CDS
T06237
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdy
Clostridium diolis
Pathway
cdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F3K33_14880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdy03019
]
F3K33_14880
03009 Ribosome biogenesis [BR:
cdy03009
]
F3K33_14880
Enzymes [BR:
cdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F3K33_14880
Messenger RNA biogenesis [BR:
cdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F3K33_14880
Ribosome biogenesis [BR:
cdy03009
]
Prokaryotic type
rRNA helicases
F3K33_14880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RRM_9
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QES74030
UniProt:
A0A5P2EZF6
LinkDB
All DBs
Position
complement(3339191..3340765)
Genome browser
AA seq
524 aa
AA seq
DB search
MGNKVFSELGLDESILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGA
PILSRIGKQDGKVNSIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALR
RGIDIVVGTPGRVLDLIRRKVLNLSSIRFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQT
MLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDV
DEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGNLEFLIAT
DVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEK
VIKSKIRRREIPTVDEIFVSKYKNMFSKIKETLEQDSYKKFIPMATELDEEFNLVEVAAA
LMDMVYSKEVNYDYTENEIGSKTDYKRLFLNVGRLDKINPRKLVDFFNENAKVKREDVGD
IDILEKFSFVNVTEAAAESIMKHCTGKKFAGRKLNVEISTKSKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaataaggtatttagtgaattaggtcttgatgagagtattcttaaggccattgat
gcaatgggatttgaagaaccttctaagattcaagctgaggtaataccagttcttttagaa
ggtcatgatgttattgggcaggcacaaacaggaacaggaaagacactggcatttggtgca
ccaatattaagcagaattggaaagcaagatggtaaggtaaatagtataatactaacgcct
acaagagaacttgctatacaggtaaatgatgaattgaatcgtatagctaaatttactaag
attaagttgcttcctgtatacggtggtcaacctattgacaggcagatttcagctttacgt
agagggatagatatagtagtaggaactccaggtagagtgttggatttaataagaagaaaa
gttttaaatttgagctctattagatttcttgtattagatgaagccgatgaaatgttaaac
atgggatttattgatgatatagaagaaataataaaaaattcaaatcaagacagacagaca
atgttgttttcagctactatgcctgaagaaatcaaaagacttgctaaaagatatatgaag
tctgaaacgaaacacatagccattttaaaaaatgcaatgactgtagctacagtggatcaa
tactattatgaaattaaaaacaaggatagatttgaaacactatgtaggatacttgatgtt
gatgaacctacatctgcaataatcttttgtaagaccaaaaggaacgttgatgaacttgtt
gaaggtcttcagggaagagggtatactgctgaaggaatgcatggagatatgaatcaaaat
cagagaataaataccttaagaaaatttaaagaaggaaatttagaattcctgatagcaact
gatgttgctgcaagaggcatagatgttgaaaatgtaacgcacgtaataaattacgatttg
cctcaggacgtagaatcctatgttcacagaataggcagaacaggtagagcaaatagaaaa
ggtgttgcttacacattggttactgcaagagaatatatgtctcttaaacatattgaaaag
gttataaaaagcaagataagaagaagagaaattcctactgttgatgaaatatttgtttca
aagtacaaaaatatgttttcaaagataaaggaaactttggagcaggatagttataagaaa
tttataccaatggcaacagaacttgatgaagagtttaacctcgtagaagtagcagcggca
ttaatggatatggtatatagtaaagaagtgaactatgactatactgaaaatgaaataggt
tcgaagacagattacaagagactgtttttgaatgtaggacgcttggataagattaatcca
aggaagctagtggatttctttaatgagaatgcaaaggtaaaaagagaagatgttggagat
attgatattcttgaaaagttttcatttgtaaatgtaacagaggctgcagcggaatccata
atgaagcattgcactggaaagaaatttgctggaagaaagctaaatgtcgaaatttcaaca
aaatcaaaaagataa
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