Clostridium diolis: F3K33_18055
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Entry
F3K33_18055 CDS
T06237
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cdy
Clostridium diolis
Brite
KEGG Orthology (KO) [BR:
cdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cdy03016
]
F3K33_18055
Enzymes [BR:
cdy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F3K33_18055
Transfer RNA biogenesis [BR:
cdy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F3K33_18055
Prokaryotic type
tRNA splicing ligases
F3K33_18055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QES74597
LinkDB
All DBs
Position
complement(4003020..4004243)
Genome browser
AA seq
407 aa
AA seq
DB search
MIEVKGKYNTAKVFTDNIETEAIEQLKELCNQPFVEGCKVRIMPDTHKGASCVIGFTADL
GDKVIPNIVGVDIGCGMLTVNLGIVDVDLEKLDEIIHKYIPSGMNVHEGRVVRFPELQNL
KCYRSLKNTKRIERSIGTLGGGNHFIEINESANGIKYLVIHSGSRNLGTQVASIYQNLAI
DLCSGKGDYFVKREKIISEYKADGRRKEIQKALKDLEALYNDLMPSYPKELCFLSGDYRK
DYLHDMNICQEYAVLNRNTMADIILKKMFGKGFDEFEAFSTTHNYINFKDNIIRKGSISA
YEGEKVLIPLNMRDGSIIAIGKGNPDWNYSAPHGAGRIMSRTKAKEKVNLEEFKASMEGI
FTTSVTEATIDEAPMVYKPKEEILENISETVDIIEIIKPIYNFKAQG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagttaaaggaaaatataatactgcaaaagtatttacagataatatagaaaca
gaagcaattgaacaattaaaagaattatgtaatcagccttttgtagagggctgtaaggtt
agaataatgcctgatacacataaaggggcaagctgtgttattggatttacagctgattta
ggtgataaagtcattcctaatattgtaggagttgatattggatgcgggatgttaactgta
aatttaggaatagtagatgttgatttagaaaagctagatgagattatccataaatatatt
ccatcaggaatgaatgtccatgaaggaagagtagttagattcccagaattgcagaattta
aaatgttatagaagcttgaaaaatactaaaagaattgaaagaagtatcggcactttaggt
ggaggaaatcactttattgaaataaatgaaagtgctaatggcataaagtatcttgtgatt
cactcgggaagtagaaatttaggaacacaagtggctagcatttatcaaaatcttgcaata
gatttatgcagtggtaaaggtgattactttgttaaaagagaaaaaataattagtgaatat
aaagctgatgggcgtagaaaagaaatccagaaagctttaaaagatttagaagcactatat
aatgacttaatgccaagctacccaaaagagttgtgctttttaagtggagattataggaag
gattatctacatgatatgaatatctgccaagaatatgctgtcttaaatagaaacacaatg
gcagatataattttgaaaaagatgtttggaaaaggctttgatgaatttgaagcattttct
actactcataattatataaatttcaaagacaatataattagaaaaggaagtatttcagcc
tatgaaggagaaaaagtattaattccccttaatatgagagatggaagcataattgcaata
gggaaaggtaatccagattggaattactcagcaccacatggggcaggccgtattatgagc
aggactaaagctaaggaaaaagtcaatttggaagaatttaaggcttcaatggaagggatt
tttacaacttcagttacagaagcgacaattgatgaagctccaatggtgtataagcctaag
gaagaaatacttgaaaatatttctgagactgttgatattattgaaataatcaaaccaatt
tataattttaaagctcagggttag
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