Cellvibrio sp. PSBB023: B0D95_03855
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Entry
B0D95_03855 CDS
T04725
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ceb
Cellvibrio sp. PSBB023
Pathway
ceb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0D95_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceb03019
]
B0D95_03855
03009 Ribosome biogenesis [BR:
ceb03009
]
B0D95_03855
Enzymes [BR:
ceb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B0D95_03855
Messenger RNA biogenesis [BR:
ceb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B0D95_03855
Ribosome biogenesis [BR:
ceb03009
]
Prokaryotic type
rRNA processing factors
B0D95_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AQT59320
UniProt:
A0A1U9N7R1
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All DBs
Position
complement(862229..865075)
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AA seq
948 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRNREQKKSNIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFTKNSGDSDGRIKIKDVLKEGTEVIVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGEVEVPNGMGVIIRTAGVGRSSEE
LQWDLNYLLQLWESIATAAKTSPAPAFLFQESNVIIRAIRDYLRQDVGEVIVDNKEAFDL
AAGFIQQVMPNYRSKVKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDATEALV
AIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMQPVRNQREVE
NRVRDALMMDRARVQIGRISRFGLMEMSRQRLRPSLGETHSKICPRCDGVGSIRGTRSLA
LSILRLVEDEAQKERSAEIRAICPVSVATYLLNEKRKTISSIESRNNTRVVIVPSAELMT
PHFEVQRLRDDDEGTLETSYKIVAHTDEAKSDEEDFKAKPINAPKPLVQPSSPSQPAPEP
VKKPGLLSRLIGSISSIFSGEKSEENKGKREHKRDSRRNSGRNNRRDGRNNRRDKDRKED
REILDNLEHRAAGEVKSGREQDKRENTRDAEKREATTRDNNEQRRSRNNRDQQRDNTRDV
QVGDEEQRQPRNRNQRPERDNRRPQVREEAVIASENLPLDNQETADESDEQRPSKRPAGR
RTRSQQRRRSRTQEAENTPVSTDAEENQQSEPKVLSESAQLAQQISAAIAEHAQHSQPKA
YVIDTEVIASADINESSETSSPHTEPEQPVIATEAATVEARNTEIIAPATAPQLKISEPE
VATTIETTEAIDAPVEQEVTARNDANASHTETVIATTEESTAPTRASNDPRKAPKPVANV
SIITETIEAPISAALDTSLPPSVDHNPRPLSRPSNDPRLNKRSHSEQQ
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaatgcaactcaacccgaagagttgcgtgtagcactggtcgat
ggacaatggctttacgatttggatattgaaaaccgcaatcgtgaacaaaagaagtccaac
atttataaaggccgcattacccgcgtagaaccaagcctcgaagcagcatttgttgactac
ggcgcagagcgccacggcttcctgccactcaaagaaatatcccgcgaatacttcaccaaa
aactctggcgattcagacggccgcatcaagattaaagacgtactgaaagaaggcaccgaa
gtcatcgttcaaatcgataaagaagaacgcggcaacaaaggcgcagcactgaccaccttt
atcagccttgcaggccgctatctggtcttaatgcccaataaccctcgggcaggcggcatc
tcccgccgtattgaaggggaagaccgcgccgaattaaaagatgcacttggcgaagtagaa
gtccccaacggcatgggtgtaattatccgcactgcaggcgtgggccgcagctctgaagaa
ctgcaatgggaccttaactacctgctgcaactgtgggaatccattgcaacagccgcaaaa
acatcacccgcgcccgcatttctgttccaggaaagcaacgttattattcgcgcaatccgc
gactatctgcgccaggacgtgggcgaagtgattgtcgacaacaaagaagcttttgatttg
gcggcaggctttatccagcaagtaatgcctaactaccgcagtaaagtaaagctgtatcag
gacgacatccccctgtttaaccgctaccagattgaatcccaaattgagacagccttccaa
cgcgaagttaaattgccatctggaggctcaattgttatcgatgccacagaagcactggtt
gcgattgacatcaactcttctcgcgccacaaaaggcggcgatatcgaagaaaccgccctg
caaaccaacctggaagcagctgacgagattgcccgccagttgcgcttgcgcgacatgggc
ggcctgattgttatcgacttcatcgacatgcaacctgtacgcaatcaacgcgaagtagag
aaccgtgtacgcgatgcgctcatgatggatcgtgctcgcgtgcaaattggccgcatttca
cgcttcggcctgatggaaatgtcgcgccaacgcctccgcccctctttgggcgaaacccac
tccaaaatctgcccacgctgtgatggcgtaggtagcatccgcggcacacgctctttggca
ctatcaatcctccgcctggttgaagacgaagcccaaaaagagcgcagcgcagaaattcgc
gcaatttgtccagtatctgtagctacctacctgctgaatgaaaaacgcaaaaccatttca
agcattgaatctcgcaacaacactcgcgtagtcattgtacccagcgcagagcttatgacc
cctcactttgaggttcaacgcttgcgtgacgacgatgaaggcacactggaaaccagctac
aaaatcgtagcgcacaccgatgaagccaaatcagacgaagaagatttcaaagcaaaaccg
attaatgcacccaagccattggtgcaacccagcagcccaagccagccagcaccagagccc
gtcaaaaagcctggactcttgtcacgcctgattgggtccatcagcagcattttcagcggt
gaaaaaagcgaagagaacaaaggcaagcgcgaacacaaacgcgatagccgccgcaactct
ggacgcaacaaccgtcgcgatggccgcaataatcgccgcgataaggatcgcaaagaagat
cgcgagatccttgataatctggaacaccgcgctgcaggagaggtgaaatcaggtcgtgaa
caagataagcgcgagaacaccagagatgccgaaaaacgcgaagccacaacccgtgacaat
aatgagcagcgccgttcacgcaacaaccgtgatcagcaacgcgataacacacgtgacgtg
caagtgggtgatgaagaacagcgtcagccacgcaaccgcaatcaacgccctgaacgcgac
aatcgccgcccacaagtgcgcgaggaagctgtgatcgctagtgaaaacctgcctctagac
aaccaggagactgctgatgaaagcgatgagcaaagaccatccaagcgcccagcaggacgt
cgcacacgctctcaacagcgccgccgctcacgcacccaggaagccgaaaacacacccgtg
agcactgacgcggaagaaaatcaacaaagcgaacccaaagtgctgagcgaatcagctcag
ttggcacagcaaatctctgccgccattgctgaacacgcacaacactctcaaccaaaagcc
tatgtgattgacactgaagttattgcatcagctgatataaatgagagcagtgaaaccagc
agcccccatacagaaccagagcaaccggttattgctacagaagcagcaactgtagaagca
cgcaacaccgagatcattgcaccagccaccgcccctcaactaaagatcagtgagccggaa
gtggccactacaatagagactacggaagcaattgatgctcccgtagaacaagaggtaact
gcacgcaatgatgccaacgcaagccacacagaaacggtgattgcaacaaccgaagaaagt
accgcaccgactcgcgcaagcaacgatccacgcaaagcgccaaagccggtagccaatgtc
agcatcattactgagaccattgaagccccaatttctgccgcactggacacaagcctgcca
ccgagcgttgatcacaatcctcgcccattaagcagaccgtcgaatgatccgcgactgaac
aagcgcagccattcagaacagcaataa
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