Cellvibrio sp. PSBB023: B0D95_05850
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Entry
B0D95_05850 CDS
T04725
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ceb
Cellvibrio sp. PSBB023
Brite
KEGG Orthology (KO) [BR:
ceb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceb03019
]
B0D95_05850
Enzymes [BR:
ceb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B0D95_05850
Messenger RNA biogenesis [BR:
ceb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B0D95_05850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
ResIII
nSTAND3
AAA_23
SRP54
NACHT
AAA_25
TsaE
AAA_30
UvrD-helicase
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AQT59665
UniProt:
A0A1U9N841
LinkDB
All DBs
Position
complement(1313888..1317850)
Genome browser
AA seq
1320 aa
AA seq
DB search
MSNIWSSYKQSIVNVMGQDQYKLVRRLNELEKLARAEKPYAESLEKWHAQLARSQASVQR
RLALVPAEIEFPNLPVCEKREEIAQIIANNQVVVLAGETGSGKTTQIPKICLTIGRGVKG
LIGHTQPRRIAANTVANRIAEELKTTLGEKVGYQVRFSDQSNENTLIKVMTDGILLAEIQ
HDPFLNKYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKLIITSATIDLERFSQHFNN
APIIEVSGRTYPVEVWYRPLYEFEGSDESENESDQYAAIVDAVHEIELHEKTGSGPRGGD
ILVFLSGEREIREAAEALRKAQFAHMEVIPFYARLSLAEQQKVFAAHTGRRIVLATNVAE
TSITVPGIRYVIDPGFARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRLY
SEDDFNSRPAFTDAEILRTNLAAVILQMLQLRMGDIHKFPFIDAPDHRLISDGFKLLEEL
HAVNAKNQLTPVGQQLSKLPLDPRLARMLLSAQEQSCVRELLIISSALSVQDPRERPAEK
QQAADQMHRRFWAEHSDFLGFVGLWDYFETQRQALTQNQLRKLCKKEFLSYLRLREWRDV
HHQLCVAVKDLGIRVNSEPANYESIHKALLTGLLGNLGFNHEEREYLGARNRKFAIFPGS
SLAKKTPKWIMAAELIETSKLFAHTVAKIEPEWVIAAAEHLIKRQHFEPHYDSRSGQVMV
FEKITLYGLTIVEKKSVSYSHIDPAQCRDVFIRSALVEGQYDQHPKRKSLRNKNPETDFF
SHQLQLLGELEELESKARRRDIVVDEQVIFDFYHERIPSHVVNLAGFEAWRKKAEQTNPK
VLFLTRETLMRHGAGDITQAQFPNELEWRGMVFPLSYHFEPNHAFDGVSIHVPMSVLHQV
PEHRLEWLVPGMLRDKCIGLLKSLPKNLRKHFVPVPDVVDKILAALTPDNKPLSEALALQ
LKRLTGVEVPKEAWLETNVDDYYRFNIHVVDDKGKIIASGRDLAPLRDKYRERVQQNIQS
AATDIERDGIVTWDFAELPLSMQLPRGGISIRAYPALVDKQSAVSLQVLDNPLQAQDLTQ
RGIARLIFLALNQTVKYLQKELLKGQEVALTLAGIGNRDQVADDLIMASIKHLALADQQQ
LPRSHAAFERAVNAVKDKLILHTQELASQLIASLKLLVDVKKQLKQQKNMLMLAFTVSDI
NHQLAQLFYPGLVYKTPAVWLHQYPKYMRGIQQRLEKAALNPQKDKLQLAEIAPHWQRLV
DYLAKEGDYRLAQNDALLEYRWWIEELRISLFAQTLKTLVPVSDKRLDKQWEQAMLVAQG
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatatttggtcaagttataaacaatctatcgtgaatgtcatggggcaggaccag
tacaaactggttcgccgcctcaatgaacttgaaaaactcgcccgcgctgaaaagccttat
gcagaatccctggaaaaatggcacgcgcagctagcgcgttcacaagccagtgtgcagcgt
cgtctggcattggttcctgcagagattgagttccctaatttacctgtctgtgaaaagcgt
gaagagattgcacagataatcgccaacaatcaggtcgtggtacttgctggcgaaactggt
tcgggtaaaaccacgcaaattcctaaaatttgtttgactataggtcgtggtgtgaaaggg
ctaattggccacactcagccacgccgcattgctgccaatacggtggcgaatcgtatagcg
gaggaattaaaaaccacgctaggcgaaaaagtcggataccaggttcgtttcagtgaccag
tccaacgaaaatactctaatcaaagtcatgacagacgggattttgttggcagaaatccag
catgatcccttcctgaataaatacgatacgctcatcatcgatgaagcccatgagcgcagt
ttgaatatcgattttttgctgggttatttaaaacaacttttgcccaagcgccctgatttg
aagctcattattacctcggcgactatcgaccttgaacgcttttcgcaacatttcaataat
gcgccgattattgaggtgtctggccgtacctatccggttgaggtctggtatcgcccgctt
tacgagttcgaaggcagcgatgaaagtgaaaacgaatctgatcaatacgcggcgattgtc
gatgctgtacacgaaatcgagttgcacgaaaaaaccggatcgggcccgcgtggtggcgac
atcctagtgtttttgagcggtgagcgcgaaattcgcgaagcagcagaggcgctgcgtaaa
gcgcagtttgcccatatggaagtgattccattttacgcgcgtttgagtttggctgagcag
caaaaagtctttgctgcgcatactggtcgccgtattgtactggccacaaacgtggcagaa
acctccattacggtaccgggtattcgctatgtgatcgatccgggttttgcgcgtatcagt
cgttattcctaccgcacaaaagtacagcgtttgccgattgaacctgtatcacaagcaagc
gccaaccagcgtaaaggtcgctgtgggcgtgttgctgaaggtatttgtattcgtttgtac
agtgaagacgattttaattctcgccccgcatttaccgatgcagaaattctgcgcaccaat
ctcgccgcggtcattttacaaatgttgcaactgcgcatgggcgatattcataaatttccc
tttatcgatgcgcctgatcatcgcctgataagtgacggttttaaattattagaagaattg
cacgcggttaacgcaaaaaaccaattaactcccgtagggcaacagctgagtaagctaccg
cttgatcctcgccttgcgcgaatgttgttgtcagcgcaagagcagtcttgtgtgcgtgaa
ttactgatcatctccagtgcactgtcagtgcaagacccgcgtgagcgcccggcagaaaag
cagcaagcggcagatcagatgcatcgccgtttttgggctgaacattcagattttctcggg
tttgttggcttgtgggattattttgaaacccaacggcaagcgcttacgcaaaatcaactg
cgcaaactgtgtaaaaaagagtttttgtcctatttgcgcttgcgtgaatggcgcgatgtg
catcaccagttatgtgtagccgttaaagatttggggattcgcgtcaacagtgagccagcc
aattacgagtccattcacaaggcgcttttaacaggattgctgggcaaccttgggtttaat
cacgaagagcgcgaatacctgggcgctcgcaatcgtaagtttgctattttcccgggatca
tcactcgccaaaaaaacacccaaatggatcatggcagcagagctgattgaaacctccaaa
ttatttgcgcacacagttgctaaaatcgagccggagtgggtgattgccgcagcggagcat
ttaattaagcgccagcattttgagccgcactatgacagtcgcagcgggcaggtgatggtg
tttgaaaaaattacactttatggattaaccattgttgagaaaaaatcggttagctacagc
catattgaccctgcccagtgccgcgatgtatttattcggtcagcgctagtggaagggcag
tatgatcagcaccccaaacgaaaaagcttgcgtaacaaaaatcccgaaaccgattttttt
tcccatcaactgcagttactgggtgaattggaggagttggaatccaaggcgcgccgccgt
gacatagtggtggatgagcaagttatttttgatttttaccatgagcgcattccctctcat
gttgtgaatctagcgggctttgaggcctggcgtaaaaaagcagagcaaaccaatcccaaa
gtgctgttccttacccgtgaaaccctgatgcggcacggtgcgggcgatatcacccaagcg
cagtttcccaacgaattggaatggcgcggcatggtgttcccactcagctatcactttgag
cccaatcacgccttcgatggtgtgagcattcatgtgccgatgagtgtattgcatcaagta
cctgagcaccgccttgagtggttagtgcccggtatgttgcgcgataaatgtattggtctt
ttgaagtcactacctaaaaacctgcgcaaacactttgtgccagtgccagacgtggtggat
aaaatactcgcggcacttacaccagataataaaccgctcagtgaagccttggcattacaa
ctaaaacggctcacaggcgttgaagttcccaaagaggcatggctggaaaccaacgtcgat
gattactaccgctttaatattcatgtggtcgatgacaaaggaaaaattattgccagtggt
cgtgacttggcgccattgcgcgataaataccgcgaacgtgtacaacaaaatattcaatcc
gccgcaaccgatatcgaacgcgatggcatagttacgtgggattttgctgagctgccctta
agtatgcaattgcctcgcggtggaatcagtattcgcgcttatccggcattggttgataaa
cagagcgcggtgtcacttcaagtgctggataatcccttgcaagcacaggatttaacccag
cgtggtattgcgcgattaatttttttagcgctgaatcaaaccgtgaaatatttgcagaaa
gagttattaaaagggcaggaggttgcactgactctggcgggtattggtaatcgtgatcag
gtagccgatgatttaatcatggcttccataaaacacctggctttggcagatcaacagcaa
ttgccacgcagccatgctgcctttgaacgtgcggtaaatgcggttaaggataaactgatc
ctgcatacacaagagttagcttcacagttaatcgccagtttgaaattgttggtggatgtt
aaaaaacaacttaaacaacaaaagaatatgctgatgctggcgtttaccgtgagtgatatt
aatcaccaactggcgcagttattttatccggggttggtgtataaaacgcctgctgtgtgg
ttgcatcaatatcccaagtatatgcgaggtatccagcagcgcttggagaaggcggcgctc
aatccacaaaaagacaagttgcagttggctgagatcgctcctcactggcagcggctggtg
gattatttggccaaagagggcgattaccggttggcgcagaatgacgcactattggagtat
cgctggtggattgaagagttgcgtatctccttgtttgcgcagacgctcaagactttagtg
ccagtctctgacaaacgtttggataaacaatgggagcaggctatgctagtggctcaaggc
tag
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