Cellvibrio sp. PSBB023: B0D95_06395
Help
Entry
B0D95_06395 CDS
T04725
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ceb
Cellvibrio sp. PSBB023
Pathway
ceb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ceb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B0D95_06395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ceb03400
]
B0D95_06395
Enzymes [BR:
ceb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0D95_06395
DNA repair and recombination proteins [BR:
ceb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B0D95_06395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
UB2H
Fe-ADH
ERCC3_RAD25_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AQT62304
UniProt:
A0A1U9NFT5
LinkDB
All DBs
Position
1435210..1438671
Genome browser
AA seq
1153 aa
AA seq
DB search
MTYQLPSNPPISDKTGNRQYWGQLYGSAQALTIVNAARAHKGLSLVVTSDTNTAIRLESE
LSFFAKGSEPLPVLHLADWETLPYDSISPHQDIISERLSTLYKLPGVKQGILVVPVTTLL
QRLMPQSYLIGNSLMVSVGEKFDANELRQNLERAGYHCVDTVYEHGEFAVRGSLMDIFPM
GSDVPYRIDLFDDEIESLRTFDPETQMTVDKVEKIQLLPAKEFPLNKQGINLFKQQWLER
FDVNHKACPVFQDVSAGISPPGIEYYLPLFFESCSTLFDYLPTNTLVYALGDIEKSAENF
WLELLRRYESRRVDPLRPLLEPRTIYLAIDEFFGQLKKYSRTFIESAPLDEKQGNYNFAS
IATPSLPIRAQAENPLAAIQAFLLEFDGRILFCAESAGRRETLLELLGRIRVRPTTVDTW
TDFLHHADKLAITIAPLEQGLLLTEPKIALISESQLFGERIQQQRRRKQTQDNADLVVKN
LTELKIGASVVHIDHGVGRYRGLETITIDNQTNEFLTLEYADEAKLYVPVTSLHLISRYS
GADDDLAPLHRLGSESWQKARRKAAEQIRDTAAELLEVYARRAARKGYAFPDPKTAYDAF
AASFPFEETADQQRAIEAVINDMLSNKPMDRLVCGDVGFGKTEVAMRAAFIASHGGKQVV
ILAPTTLLAQQHYESLKDRFADWPITVEVLSRFRTTKEVNQVLERIAEGKVDIVVGTHKL
LSPDIKFKNLGLLIIDEEHRFGVRQKDQIKALRAEIDILTLTATPIPRTLNMSMAGIRDL
SIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARDIQELI
PEARIGIGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPDRRSMTDDAQKRLEAISAAEDLGAGFTLATYDMEIR
GAGELLGDEQSGQIQTIGFSLYMDMLDRAVKAIRQGKQADLEKAMSEAIEINLRIPALIP
ADYLPDVHTRLVMYKRLANAENEEALRDLQVEMIDRFGLLPEQIKNLFRVTQVKITAETI
GITKLEANARGGKIEFSSDTRVDPLKIVKLVQSQPRIYKLEGANQLKFTMDLESTEKRIQ
TVVDLLDHLMTDK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacgtatcagttaccaagcaatccacccatctcggacaaaactggcaaccgccaatac
tggggacaactttacggtagtgcacaagcactgacgattgtaaatgccgccagagcccat
aaaggcctcagcctggtcgtcacctctgacaccaataccgcaatccgcctggaatccgaa
ctctcgttttttgccaaaggctcggagccgctgccggtattacatctggccgactgggaa
accttgccttatgactccatatcgccccaccaagacatcatctccgagcgcctgagcacg
ctgtataagctgcctggcgtaaaacagggcatcctggtagtgccggtaaccaccttgctg
cagcggctgatgccgcaatcctatttgattggcaatagtttgatggtgtcggtaggcgag
aagtttgatgccaatgaactgcgccagaaccttgagcgtgccgggtatcactgtgtcgac
acagtgtatgaacacggtgagttcgcggtgcgcggctcgctcatggacattttccccatg
ggcagtgatgtgccctatcgcatcgacctgtttgatgacgaaattgaaagcctgcgcacc
tttgatccggaaacacagatgacggtagacaaggttgaaaaaattcaactgctacccgcc
aaagaatttccgctcaataaacaaggtatcaacctgttcaaacaacaatggttggaacgc
tttgatgtaaaccacaaggcctgcccggtattccaggatgtcagcgccggtatttcaccg
cccggtatcgaatattatttgccacttttttttgaaagctgcagcacgctatttgattat
ctccccaccaataccttggtctatgcactgggtgatattgagaaatctgctgaaaacttt
tggctggaattattgcgccgctatgaaagtcgccgcgtagatccgctgcgcccactgctt
gagcctcgcactatttatttggcaattgatgaattttttggccaattgaaaaaatattcg
cgcacatttatagaatcggccccgctggatgaaaaacagggcaactacaattttgcatcc
atcgccacaccatcattgcccattcgcgcacaggccgaaaacccattggccgccattcag
gcatttttgttggaatttgatggacgtattttattttgcgcagaatctgccggcagacgt
gaaactttgctggaactgctgggacgaattcgcgttcgccccactactgtcgacacatgg
actgactttttacatcacgccgacaaacttgccattactatcgctccccttgagcaaggc
ctgttattaaccgagccgaaaattgcgttaatttctgagtcgcaattatttggcgagcgc
atccagcaacaacgccgccgtaaacaaacccaggacaatgcagacctggttgtcaaaaat
ctcactgaattaaaaattggcgcatctgttgttcatattgaccacggtgttgggcgttat
cgcggactggaaaccattaccatcgataaccaaaccaatgaattcctgacattggaatat
gctgacgaagccaagctctatgtgccggttaccagtttgcatttgatcagccgctatagc
ggtgccgatgatgaccttgcgccattgcacagattgggcagtgaatcctggcagaaggcc
agacgcaaagccgccgaacaaattcgcgataccgcggctgaattattggaagtctatgcg
cgccgcgccgcgcgtaaaggttatgcatttccagatcccaaaacggcctatgatgctttt
gcggcaagctttccatttgaggaaacagccgatcagcagcgcgccattgaggcagttatc
aacgacatgctctccaacaagccaatggatagattggtttgtggcgatgtgggttttggc
aaaacagaagtggcgatgcgcgctgcctttattgccagccacggcggcaaacaagtagtg
atcctggcgcccacaaccctgttggcacagcagcattacgaatcgctcaaggatcgcttt
gccgattggccaattacggttgaagtattatcgcgcttccgtaccaccaaagaagtgaat
caagtgctggaacgcattgccgaaggtaaggtggatattgtcgtaggcacgcacaaatta
ttatcgcctgatattaaattcaaaaacttgggcttattgattatcgacgaggaacaccgc
tttggtgtgcgccaaaaagatcaaattaaagcactgcgcgccgagatcgatattcttaca
ctcaccgccacgcctatcccgcgtacactcaatatgtctatggcgggcattcgcgattta
tccattatcgctacaccaccggcgcgccgactgtccgtaaaaacatttgttcgcacctat
gacgaagccgtgatcaaggaagccatactgcgtgaaattttacgtggtggtcaggtctat
tatttacacaacgaagtagacaccatagaaaaagtagcacgcgacatacaagaactgatt
ccggaagctcgcatcggtataggtcatgggcaaatgcgtgagcgcgacctggaacgggtg
atgtccgacttttatcacaagcgtttcaatataatggtgtgcaccactattatcgaaacc
ggtatcgatattcccagcgccaataccattattattaatcgcgccgataaatttggcttg
gcacaattgcaccaattacgtggtcgtgttggccgctcacatcaccaggcttatgcatat
ttattaacgccagatcgccgctcaatgaccgacgatgcacaaaaacgactggaagccatt
agcgctgcagaagatttgggcgcgggctttacgctggccacctacgacatggaaattcgc
ggcgccggtgaattattgggtgatgaacaaagcggacaaattcaaaccattggtttttcg
ctctatatggatatgcttgaccgcgccgttaaggctatacgccagggcaagcaggcggac
ctggaaaaagccatgagcgaagccattgagatcaaccttcgcattcctgcgctgattccg
gcagattatttgcctgatgtccatacccgtctggtaatgtacaaacgcttggccaatgcc
gaaaatgaagaggctctgcgcgatttacaggtagagatgatagaccggtttggtttactg
cccgaacaaattaaaaacctgttccgtgtcacccaagttaaaatcaccgccgaaaccatt
ggcattaccaagttggaagccaatgcccgtggcggaaaaattgaattctccagcgatacg
cgggtagatccattaaaaatagtaaaattggtacaaagccagccacgtatctacaagctg
gagggtgcaaaccaactgaaatttacgatggatttggagtcaacagaaaaacgcattcaa
accgtcgttgacctgctcgatcatttaatgacagataaataa
DBGET
integrated database retrieval system
