Cellvibrio sp. PSBB023: B0D95_17960
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Entry
B0D95_17960 CDS
T04725
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ceb
Cellvibrio sp. PSBB023
Pathway
ceb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ceb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B0D95_17960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ceb03021
]
B0D95_17960
03400 DNA repair and recombination proteins [BR:
ceb03400
]
B0D95_17960
Enzymes [BR:
ceb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B0D95_17960
Transcription machinery [BR:
ceb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B0D95_17960
DNA repair and recombination proteins [BR:
ceb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B0D95_17960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AQT62527
UniProt:
A0A1U9NGC5
LinkDB
All DBs
Position
4164407..4168630
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLLKSQGQVEEFDSIRISLASPEMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLERGQLLSDEQYFEAMEEFGDEFEAQM
GAEAIQTLMRAIDLESEIQRLREEIPNTTSETKIKKYSKRLKLLEAFFFSGNKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYWMTRDRVNAKGENMIFADTAEVSRAYYSK
QVDLQARIKVRLVETLIGAEGERTSETKLVETTVGRVLLWEIVPPGIPLEMINRPMVKKA
ISAVINYCYRVVGLKATVIFADRLMYMGYDFSTKSGSSIGVNDFTIPAAKAEIIGRADAE
VKEIETQYASGLVTQGEKYNKVIDIWSRANDLVAKSMMEGISKEAVINRDGVEELQPSFN
SVFMYADSGARGSPAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTLQDCGTDEGLTMSPVIEGGDVIESLGDRIL
GRIIARDVIRPGTDEILVPAGTMIDEAWVERVEAMGIDEVLVRSPITCEARSGICSMCYG
RDLARGHRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSVQVKQEGTVRL
LNVKVVSNPAGNLVAVSRSGELAIADSSGRERERYKIPYGALITVKDGEAVKGGQIIAKW
DPHTHPIVSEVAGTVAFSGMEDGLSIRRQTDELTGLSSIEVLDPAERPSAGKDLRPAVTL
VDAKGKELFLANTNVPAHYMLPAKAILSINNHDIINVGDIIARIPQEGSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTVSFGKETKGKRRLIITPVDGQLLPDGSTHYEVLIPKHR
QLTVFEGEMVAKGEVVSDGPSNPHDILRLQGVEALARYITNEIQDVYRLQGVKINDKHIE
TIVRQMLRKVEITTMGDSTFVKGEQVEYNQLLEENEKLRAEARQPANYERQLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKKDALRGLKENVVVGRLIPAGTGLAYHSDRKRRRE
AAQVQDVGVSAEDVEAALTEALKSSIG
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttactgaatttactcaagtcccagggacaggtcgaagaattcgactctatt
cgtattagcttggcatcacctgaaatgattcgttcatggtcgtttggcgaagtgaaaaag
ccggagactatcaactaccgtaccttcaaaccagagcgtgaaggtttgttctgcgccaag
atttttggaccagtaaaagattacgaatgcttgtgcggtaagtacaagcgcatgaaacat
cgcggcattatctgtgagaagtgtggcgttgaagtaaccttggctaaagtgcgccgtgag
cgtatgggccacattgagttggctagcccggttgcgcatatctggtttttgaaatcactg
ccgagccgtattggtttgttgctggatatgacgctgcgtgatatcgagcgcgttctgtat
tttgaatcctacgtagtgaccgagccaggtatgactaccttggagcgtggtcaattgctt
tctgacgagcaatactttgaagccatggaagaattcggtgacgaattcgaagcgcaaatg
ggtgctgaagccattcaaaccttgatgcgtgctatcgatttggaatcagaaatccaacgt
ctgcgcgaagaaatcccgaacaccaccagcgaaaccaaaattaagaagtactccaagcgc
ttgaagctgttggaagcattcttcttctctggcaacaagcccgagtggatggtaatggaa
gtgttgccggtattgccgccggatttgcgtccattggttccattggacggcggccgtttt
gcgacttccgacctgaacgatttgtaccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgcctgctggacttgaatgcacccgacattatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgcgctgctcgataacggccgtcgtggtcgtgcgattactggttcgaac
aagcgtccgctgaaatcattggcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aacctgctcggtaagcgtgttgactactcaggtcgttcggtgatcgtagtaggtccaacc
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgttggaactgttcaagccgttt
attttcagcaagctcgagttgcgtggtttggcgaccacgattaaagccgccaagaaaatg
gttgagcgcgaagaagctgtcgtgtgggatatcctcgacgaagtgatccgcgagcatccg
gttctcctgaaccgtgcaccaactcttcaccgtcttggtatccaggcgtttgagccagtg
ctgattgaaggtaaagcaatccaactgcacccactcgtatgttctgcgtacaacgccgac
ttcgatggtgaccagatggctgttcacgttccactgaccattgaagctcagttggaagct
cgtgcattgatgatgtcaaccaacaacatcctttctcccgcatcaggtgagccaatcatc
gttccttcgcaggacgtggtattgggcttgtattggatgacccgtgatcgtgttaatgcc
aaaggcgagaacatgatttttgcagatactgcagaagtgtcacgtgcctattactccaaa
caagttgacctgcaagcacgcatcaaagtgcgtttggttgaaaccctcattggtgctgaa
ggcgaaagaactagcgagaccaaattggtagaaactaccgtgggtcgcgtattgctgtgg
gaaatcgttccgccaggtattcctctggaaatgatcaatcgcccaatggttaagaaagcg
atttctgcagttattaactattgctatcgcgtagtcggcttgaaggctacggttattttt
gctgaccgtttgatgtacatgggctatgacttctctaccaagtcaggttcttctattggc
gttaatgacttcactattcctgctgccaaggctgaaatcatcggtcgtgctgatgcagaa
gtaaaagaaatcgaaacccaatatgcttctggtctggtaactcagggcgagaaatacaac
aaggttatcgatatttggtcccgtgccaacgatttggttgccaaatcgatgatggaaggt
atctccaaagaagctgttattaaccgtgatggcgttgaagaattacagccttcatttaac
tccgtatttatgtacgccgactcaggtgcgcgtggttcgcccgcacagattcgtcagttg
gccggtatgcgtggtttgatggcacgtcctgatggctcgatcatcgagactcctattaaa
gcaaacttccgtgaaggcttgaacgtactccagtacttcatttcaacacacggtgcgcgt
aaaggtttggcggatactgcattgaaaacggcaaactccggttacctgactcgtcgtttg
gttgacgttgcacaagatctggtggttaccctgcaagattgtggtaccgatgaaggcctg
actatgtcaccggttattgaaggtggtgatgttattgagtctttgggtgaccgtatcctc
ggtcgtattattgcgcgcgatgtgattcgtccgggtactgatgagattctggttcctgcc
ggcaccatgatcgacgaagcttgggttgagcgtgttgaagccatgggtatcgacgaagta
ttggtgcgctcaccaattacttgtgaagcacgcagtggcatctgctctatgtgttacggt
cgtgacctggctcgtggtcatcgtgttaacgttggcgaagcagttggtgttattgctgcc
cagtcaatcggtgaaccaggtacccagctgaccatgcgtaccttccacattggtggtgcg
gcatcgcgagcgtctgcggccgatagcgtacaagttaaacaagaaggtactgtgcgcctg
ttgaacgtgaaggttgtaagcaaccctgcgggcaatctggtagctgtatctcgttcaggc
gaattggcgattgctgatagcagtggccgtgagcgtgagcgttacaagattccttacggt
gcattgatcaccgttaaagatggagaggcagttaaaggcggtcaaattatcgctaaatgg
gatccgcatactcacccgattgtatcggaagtggcaggtactgttgctttctctggtatg
gaagacggtctttctatccgtcgccagaccgacgagttgactggtttgagctctattgaa
gtattggatccggccgagcgtccatctgccggtaaagatctgcgcccagcggtaactctg
gtggatgcaaaaggcaaagagttgttcctggctaacaccaatgtgcctgctcactacatg
ctgccagccaaggcgattttgagtatcaacaaccacgacatcatcaatgttggtgacatt
attgcgcgtattccgcaagaaggttccaagactcgtgatatcaccggtggtctgccgcgc
gttgctgacttgtttgaagcgcgtcgtccgaaagagccgtcaatcctggcggaaatctcc
ggtactgtgagcttcggtaaagagaccaagggcaaacgtcgtttgattattactcctgtg
gatggtcaattgttaccagacggttcgacccattacgaagtgctgattccgaaacatcgc
caattgaccgtatttgaaggtgagatggttgccaagggtgaagttgtttctgatggccca
agcaatccgcacgatatcttgcgcctgcaaggtgttgaggcgctggcgcgttacatcacc
aacgaaattcaggatgtttatcgcttgcaaggtgtaaaaatcaacgataagcacattgag
accatcgtgcgtcaaatgttgcgtaaagttgaaatcaccaccatgggcgactctaccttc
gtgaaaggtgagcaagttgagtacaaccaactgctggaagaaaacgaaaagctgcgtgca
gaagctcgccagcctgccaactacgagcgtcagctgctgggtatcaccaaggcatctctg
gcaactgaatcgtttatttcggcggcatccttccaggagacaacacgcgttctgacggaa
gcggcggtaacaggcaagaaagatgccttgcgcggcctgaaagagaacgtagtggttggt
cgattgattcctgccggtaccggtttggcatatcactccgaccgtaagcgtcgccgtgaa
gctgcacaagtacaagatgtgggtgtgagtgctgaagatgttgaagcagcactgaccgaa
gcattgaaatcaagcattggttaa
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integrated database retrieval system
