Cellvibrio sp. PSBB023: B0D95_19490
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Entry
B0D95_19490 CDS
T04725
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ceb
Cellvibrio sp. PSBB023
Pathway
ceb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ceb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B0D95_19490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ceb03021
]
B0D95_19490
Transcription machinery [BR:
ceb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B0D95_19490
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AQT62049
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Position
complement(4497689..4499548)
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AA seq
619 aa
AA seq
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MSEDVQQQQSRIKELIARGKEQGYLTYAEVNDHLPEDISDPDQVEDIIQMINDMGIRVYE
TAPDADTLLMTDGDSAADEIAAAEAAAALVAVETETGRTTDPVRMYMREMGTVELLTREG
EIVIAKRIEEGVRELMHAIAYWPGAVQQVLDEYALVAKEERRLADVIIGWLDPVEDIPAA
LAEVEEIPVAAAGAKPAAADDEEEEAATEDEEEAVSGVDPEEARARFEELQKQHDKTTKA
LAKYGYGSKQAEKELSVLGDLFKFFKLPARQFEPIYTKAREALDSVRKHERHIMDLCTRR
AQMQRKTFIKEFPGNETNEAWLPEVLKGKVEAPEKLERVLPDVQNAQQQLAHIEAESGLS
LASIKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEM
GREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIISPVES
ATMEGLMEATREVLAGLTAREAKVLRMRFGIDMHTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDHLRSFLDD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagacgtccaacagcaacagtcccgtattaaagaactgatcgcccgcggtaaa
gagcagggttatttgacctatgccgaggtaaacgatcacctgccggaggacatctctgat
ccggatcaggtcgaagacatcattcagatgatcaacgacatgggtatccgtgtgtacgaa
actgcacccgacgccgataccctgttaatgaccgatggtgactccgccgccgacgagata
gccgccgccgaagctgctgccgcactggttgccgtggagaccgaaaccggtcgcaccacc
gacccggtgcgtatgtacatgcgcgaaatgggcaccgtagagctgctcacccgcgaaggc
gaaattgttatcgccaagcgtattgaagaaggcgtgcgtgagttaatgcacgccatcgct
tactggcccggcgccgtacaacaagtgttggacgaatacgcattggttgccaaagaagag
cgccgcctggccgacgtaatcatcggctggctggacccggtggaagatattcccgccgca
ctggctgaagtggaagaaatccccgttgctgcagcaggcgccaaacctgccgctgctgac
gacgaagaggaagaagccgcaacagaagatgaagaagaagccgtttccggggtagatccg
gaagaagcgcgtgcacgttttgaagagctgcaaaaacagcacgacaaaactaccaaagca
ctcgccaagtatggctatggcagcaaacaagccgagaaagagctatcggtattgggcgat
ttgtttaaattcttcaaattgcctgcacgccagttcgagcccatctacaccaaagcgcgc
gaagcactggacagcgtacgtaaacacgagcgccacatcatggatctgtgcacccgcaga
gcccagatgcaacgcaagacctttatcaaagaattccctggcaacgaaaccaacgaagca
tggctgcctgaagtgctcaaaggcaaagtggaagcgcccgaaaaactggagcgtgtactg
cccgatgttcaaaatgcccaacaacaactggcacacattgaagcagaaagtggcttgagc
ctcgccagcatcaaagatatcaaccgtcgcatgtcgattggtgaagcacgtgcacgtcgc
gccaaaaaggaaatggtagaagccaacctgcgcctggttatttctatcgccaagaaatac
accaaccgtggcctgcaattcctcgacctgattcaggaaggtaacatcggcttgatgaaa
gcggtggataaatttgaataccgtcgcggttacaaattctccacctacgccacctggtgg
attcgccaagcgattacccgctctattgcggatcaggcgcgcaccatccgtattccggtg
cacatgattgagaccatcaacaaactcaaccgtgtatcgcgtcaaatgctgcaggaaatg
ggtcgcgaacccactcctgaagaattgggcgagcgcatggaaatgccagaagacaaagtg
cgtaaagtgctgaagattgccaaagaacctatctccatggaaacacccatcggcgatgac
gaagattcacatctgggcgattttatcgaagacaccaccattatttccccggtggagtca
gcgacaatggaaggcctgatggaagctacacgcgaagttctggctggccttactgcacgc
gaagccaaagtactgcgtatgcgctttggtatcgacatgcacaccgaccacaccttggaa
gaagtgggcaaacaatttgatgtaacgcgtgagcgtatccgtcaaatcgaagctaaagcc
ttgcgcaaactgcgccacccatcgcgctctgatcacctgcgcagcttcctcgacgattaa
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