Cardinium endosymbiont of Sogatella furcifera: CE557_818
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Entry
CE557_818 CDS
T05597
Name
(GenBank) beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cec
Cardinium endosymbiont of Sogatella furcifera
Pathway
cec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CE557_818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cec03021
]
CE557_818
03400 DNA repair and recombination proteins [BR:
cec03400
]
CE557_818
Enzymes [BR:
cec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CE557_818
Transcription machinery [BR:
cec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CE557_818
DNA repair and recombination proteins [BR:
cec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CE557_818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AXI24604
LinkDB
All DBs
Position
1:1047688..1051983
Genome browser
AA seq
1431 aa
AA seq
DB search
MKFKRNRAQSTQFSGIIASLSSPEVILSRSSGEVTLPETINYRTHKPETKGLFCERIFGP
VKDWECHCGKYKGIRYKGIVCDRCGVEITEKKQRRQRVGHIELVVPVTHIWYFRVLPSKI
SYLLGIPTKKVEQIVYYERYVVIQPGIKKDEGVAAMDLLSEDEYLNILDQLPPENQLLSN
SDPNKFIALIGSEAIEAVLKGLDLEKLSVDLREQLLTDASQQRRIEVVKRLKIVEGFRDV
HKKVENRPEWMVMRILPVIPPELRPLFSLGGGKFATSDLNDLYRRVIIRNNRLKRLLDIK
APQIIIRNEMRMLQEAVDSLFDNSRKVNSVASEGIRPLKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELRLHECGLPKEMAVELFMPFIIRRLIERGVAETVKVAKRLIEEKDP
VIWDVLENVLKGHPILLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAIAEASLLMLASYNVLNPSNGIPITIPSRDMILGLHYLTKGRRSRSSDVVL
GEGMSFYAPEEVLMALAHEKVSKHAYIKLRLSIAHADGSVAYRFIETTVGRVLFNEYCPA
GMAFVNETLNVRNMQRIVTDMYSQFGTVVTVAFLDNIKALGFNTAFKAGMTIGLDDVKIP
ANKNELIAQATAEVESIWGNYMLGLITDNERYNQVIDVWTRTNTRITNQLMEQLEQDQDA
FNSVYMMMISGARGSREQVRQLGGMKGLIGRPQKSTQGAVGEIIEHPIISNFQEGLNVIE
YFIATHGARKGLADTALKTADAGYLTRRLVDVAQDLTVVEEDCGTLKGIHVTAVKVENRV
VESLSERILGRVVVEDILDPQTGILLVARGNGIDEQMAARIEAAGLEGVLVRSVLTCDLP
QGVCVKCYGRNLATGNMVSVGEAVGVIAAQSIGQPGTQLTMRTFHVGGIASNVTVDAKVK
AKYAGVVNFEDLMVTSYIDANGMGVEVVMSRSSELQILDADTRKVLTSTHLPYGSHLKVK
NNQMVSYDQELYHWDPYNVVLLATQDGVVNFLGLEEGITYQEEFDEQTGRKAKVMIESRD
KTKHPSVVLCDEAGVTIASYTLPVKAQLAVEVGDKVHKGEVLARVPRIINQSRDITGGLP
RVVELFEARKPANTAFISELSGVVTYGGIKRGNREIFIESKEGIQVKYMIPLSKHILVQD
NDYVKVGEVITDGAVAAADLLVTKGPLVAQEYIMNELQNVYRLQGEKINNKHIEIIIKQM
MRKVEVLDPGDTTLLHGQVIDKVKFFEENDRVRDQSIVLKPGDSTLFKQGQFISSSRLQQ
ENDKLKQQGLVAVEAKPVELAVAQPKLQGITQISLATESFLSAASFQETAKVLSDAGISA
KYDRLKGLKENIIVGHLIPAGTGMRRYEKLVVNSKSEYEALVAAKAGATAG
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttaaaagaaatagggcacaatccactcaattttctggcattattgctagtctt
tcctctccagaggttattttgtcgcgttcatcaggggaagtgaccctaccagaaaccatt
aactatagaacacataaacccgaaacgaaagggttgttttgtgagcgtatatttggccct
gtaaaagattgggaatgtcattgtggcaaatacaaaggcattcgctataaaggcattgta
tgtgatcgatgtggcgttgagattacagaaaaaaagcaacgtaggcaacgggtgggccac
attgagttggtagttccggtcacccatatctggtattttagagtcctccctagtaagatt
agctatttgcttggtatacctactaaaaaagtagaacaaattgtatactacgagcgttat
gtagtgattcagcctggtatcaaaaaagatgagggggtagccgctatggatctgttatct
gaggatgagtaccttaatattttagatcagctgcctccagaaaaccaattgttgagtaac
tcagatcctaataagtttattgccctaattggttcagaagcgattgaagcggtgctcaag
gggcttgacttagaaaagctttccgttgatttgcgcgaacagctgttgaccgatgcctca
cagcagcgccgcattgaagttgtcaaaaggctaaaaattgtagaaggctttagggatgtc
cataaaaaagtagaaaaccgtccagagtggatggtgatgcgtatcttgccagtcattcct
cctgagttacgtcctcttttttcattaggcggtggtaaatttgctacttctgatttaaat
gatctctatagaagggtgattattagaaacaacagactcaagcggttattggacattaag
gctcctcagattattatacgcaatgaaatgcgtatgttgcaggaagccgttgattcttta
tttgataattcccgtaaagtaaattctgttgcttcagagggcattcgaccattaaagtcc
ctttcagatatgttaaaagggaagcagggtcgttttaggcagaatttgcttggtaagcgt
gtggattattccggcaggtcggttattgtggtagggcctgagttgcgcttgcatgagtgt
gggctacctaaagagatggccgttgagttatttatgccttttatcatacgcaggcttata
gagcgtggcgtagcagaaactgtaaaagttgccaaaagattaatagaggaaaaagaccct
gttatttgggatgtattagagaatgtattgaaaggccatcctatattgttgaaccgtgca
cctacccttcatcgattgggtatccaagcttttcaacctaaattaattgaaggtaaagcc
attcaattgcatcctttggtttgtactgctttcaatgccgactttgatggagatcaaatg
gccgtccatgttccccttggacaggaagccattgccgaagcttcattgctgatgctggca
tcctataatgtattgaatccttccaatggtattcctattaccattccctcccgtgacatg
attttaggcttgcattacctcaccaaaggaaggcgtagtaggtccagtgatgtggtatta
ggagagggtatgtctttttatgcacctgaggaggtattgatggctttggcccatgaaaag
gtttcaaagcatgcttatattaagctacgtttgtctattgcgcatgcagatggcagcgtt
gcctatcgtttcatagagactacggttggcagagtactcttcaacgaatattgcccagcc
ggcatggcctttgtcaatgagacccttaatgtgcgcaacatgcagcgtattgtaaccgac
atgtacagtcaatttggtacagtcgttaccgttgcgtttttagataacattaaagcttta
ggctttaacactgcattcaaggcagggatgactattggtcttgatgatgtaaagataccg
gctaataaaaatgaactcattgcccaagctactgcagaagtggaatctatttggggtaat
tatatgttgggtttgatcaccgataatgaaagatataatcaagtaattgatgtgtggacc
agaaccaatacccgtattaccaatcagctcatggaacagttagagcaagatcaagatgct
tttaactccgtttatatgatgatgatttctggtgcaagggggtcccgtgagcaggtacgt
cagttaggcggtatgaaaggcttaattggtaggcctcaaaaaagtacccaaggcgcagta
ggagaaattattgaacaccctattatttctaattttcaagaggggttgaatgtgattgag
tattttattgctacgcatggtgccagaaagggtttggcggataccgctttaaaaacagcg
gatgcaggttatctaacgagaaggttggtcgatgtagcacaagacttaactgttgtggaa
gaggattgtggtacccttaaaggcattcatgtaaccgctgtgaaagtagagaatagggtg
gttgaatcactttcagaacgtattctcgggcgtgtagtagtcgaagatattttggatccc
caaacaggcattttgctcgttgcacgtggcaacggcattgatgaacaaatggctgcgcgc
atagaagcagctggtctagaaggcgtcttggtacgttctgtcttgacctgtgatttaccg
caaggggtttgtgtaaaatgttatgggcgcaacttagctacaggcaatatggtatctgtg
ggcgaggcagttggggtcattgcggcacaatctattgggcagcctggtacacagcttacc
atgagaaccttccacgtcggaggtattgcgtctaatgtgaccgttgatgcgaaggttaaa
gccaagtatgcaggggttgtcaactttgaagacctaatggtgaccagttatatagatgca
aatggaatgggcgtggaagttgttatgagccgctcttcggagctacaaattttggatgca
gatacaagaaaagtcttgaccagtacccatttaccctatggttcacatcttaaagtcaaa
aacaatcaaatggtaagctatgatcaagagctttaccattgggatccttataatgtggta
ttattggctacccaggatggcgtcgtgaacttcctaggccttgaagaagggattacctat
caagaagaatttgatgaacaaaccggccggaaagcaaaggtcatgattgagtctagggat
aaaaccaaacatccaagtgtagtcttatgtgatgaggcaggtgtaaccattgcttcgtat
acccttcctgtgaaagcgcagttagccgtagaagtaggggacaaggtccataaaggagag
gtgcttgctcgggtgcctcgtatcatcaatcaatctcgagacattacaggtggtttacct
cgtgtagtggagctttttgaggctagaaagcctgccaatacagcttttattagtgagtta
agtggcgtggtaacctatgggggtattaaaagaggcaatagagaaatttttattgagtct
aaagaaggcatacaggtcaagtatatgatcccattgtctaagcatatcttggtccaagac
aacgactatgtaaaagtaggggaggtgattacagatggtgcggtagctgctgctgatctt
ttggttacaaaaggtccactggttgcacaggaatacattatgaatgagctacaaaacgta
tatcgtttacaaggtgagaaaatcaataataaacatattgaaatcatcattaaacagatg
atgcgtaaggtagaggtactggatccaggcgatacgaccctattgcatgggcaggtgatt
gataaggttaagttctttgaagagaatgatagggttcgtgatcaatctattgtgctcaag
cctggtgattctacattatttaagcaagggcaatttatctcctctagtaggttgcaacaa
gagaatgataaactaaagcagcaggggttggtggctgttgaagccaaaccagtagaattg
gccgttgcgcaaccaaaactgcaaggtattacccaaatctccttggctacagaaagtttc
ttatctgcagcttctttccaagaaacagctaaggtgttgagtgatgcaggtattagtgcc
aagtatgataggctaaaaggattgaaagaaaatattattgtaggtcatttgattcctgct
ggaacgggtatgcgccgttacgaaaagttggttgtcaactctaaaagcgaatatgaggct
ttggtagctgctaaagcgggtgcaacagcggggtag
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