Dickeya fangzhongdai ND14b: LH89_01095
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Entry
LH89_01095 CDS
T03347
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LH89_01095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_01095
Enzymes [BR:
ced01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LH89_01095
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LH89_01095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_22
AAA_25
AAA_11
DUF3799
Motif
Other DBs
NCBI-ProteinID:
AIR67867
LinkDB
All DBs
Position
259879..263553
Genome browser
AA seq
1224 aa
AA seq
DB search
MTARALPSVLDVLRFPLSGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPD
ILVVTFTDAATRELRDRIRARLAQAAAYFQPDGKDEAVDPLLHELRADYPPEQWPDCARK
LQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSELLLEVVRDYWRTFFF
PLDARDVLELRDSWPSPESFYRSVTPLLEYADDIGIDDLPAQIFSAVREEKTRRLAALKA
PWPQWCDELRDLLNAAVAQKKADGRKLQARYFDPWLDKLQHWAASDETTLDIGTGWTRLT
PQGLRECWKIPEEAPQHPALTAMETLQQQLDALPEPRSQLLRHACRWISQRFQHEQESRA
QMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADND
SQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVGAVNQVFMQ
AENRVDGAGAFLFRQSDGGNPVPFLPVQANGRDEAWVLEGADAAALTCWTPATDEPLSSA
EYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQPLRPVRPGDMAVLVNTGREAMAVRAQL
SARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPSLGLSWQALDRL
NHDEQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFDVPRRLLAADNARALTDVLHLSE
LLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEYPLV
FLPFACAFRAVSQRDVPLKFHDDDGQPRLELIASDEAVRRADHERLGEDLRKFYVALTRA
RYAMWLGMAPLKELEKSAPGYLLGAGEPLDPAQLAQQLSAWCGADSQITPLPETDEDIYR
PEQDTSALGQEPPLPNMRSHRWRITSYSGLQLAPEGHYREYREPAAGDVPEVQSAKQETF
SEPQATAERLPPLPTGHDMYSFPRGAAPGSFLHGLLEWAGKEGFAALAADRSRVEDQVAR
RCNRQGWTQWIPMLTDWLMALLNQPLALPTQPGSAVSLAGLTQYQVEMEFWFALSQVDTQ
VLDQQVRAATLAGEPRAMLMREQLNGMLKGFIDLVFEHQGRYYVLDYKSNWLGADAADYD
PPRMARAMLDHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYLFLRGSQAPGGGVC
AQRPDKALIDALESLFSGETEATA
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcgtgcgttaccttctgtgctggatgtgctgcgctttccgctttccggcagc
cgcctgatcgaagccagcgccggcaccggcaaaaccttcaccatcgccatgctgtatgtg
cggctggtgctggggcatggcggcgaacaagcgttttcccgcccgctcaacccgccggac
attctggtggtgacctttaccgatgccgccacccgcgagctgcgtgaccgtattcgcgcc
cggctggcgcaggcggccgcttactttcagccggatggcaaggatgaggcggtcgatccg
ctgctgcatgaactgcgcgccgactacccgccggaacaatggccggactgcgcgcgcaaa
ttgcaactggccgccgaatggatggatgaggcggcggtgtccaccatccacagttggtgt
aaccggatgctgggcgaacacgcttttgacagcggcagcctgtttaaccagacgctggaa
accgatcagagcgaattgctgctggaggtggtgcgcgattactggcggacgttctttttc
ccgcttgatgcccgcgatgtgctggaactgcgcgatagctggccgtcgccggaaagcttt
tatcgcagcgtgacgccgttgctggaatatgccgacgacatcggcatcgatgacctgccc
gcgcagattttcagcgcggtccgcgaagagaaaacgcgccgactggcggcgctaaaagcg
ccctggccgcagtggtgcgatgaattgcgcgacctgctgaacgcggcggtggcacagaaa
aaggcggacggtcgcaagctgcaggcccgctatttcgacccgtggctggacaaactgcaa
cactgggccgccagcgacgagacgacgctggatatcggcaccggctggacgcggctaacc
ccgcaagggctgcgggagtgctggaaaatccccgaagaggcgccgcaacatccggcattg
accgcgatggagacgctgcaacagcagttagacgcgctgccggaaccgcgtagtcagtta
ctgagacacgcctgtcgctggataagccagcgattccagcatgagcaggagagccgggcg
caaatggggtttcaggacctgctgacccggttggatgccgcgttgcgcggcgacaacggc
gagcggctggcgcagcgtattcgccgtcagttcccggtggcgatgatcgacgaatttcag
gacaccgacccgctgcaataccgtattttcgataccttgtaccgggtggcggacaacgac
tcgcagcaggggctgatcctgatcggcgacccgaaacaggcgatttacgcgtttcgcggc
gccgatatctatacctatttgcgcgctcgccgcgataccgacgggcggcattacacgctg
ggtacgaatttccgctctactcaggcgatggtcggcgccgttaatcaggtgtttatgcag
gcggaaaaccgtgtcgacggcgcgggcgcgtttctgtttcggcaaagcgacggcggcaat
ccggtgccgtttttgccggtacaggccaacgggcgcgacgaggcgtgggtgctggagggt
gctgacgccgccgcgctgacctgctggacgccggcgacggacgagccgctgtcgtcggcg
gaataccgccagcgtatggctgccggctgcgcccgcgaaatggtgcggttgctgcagctc
ggcgggcaaggtcgggccggttttgccgtaccggggcagccgctgcgcccggtcagaccg
ggggacatggcggtgctggtcaataccgggcgcgaagcgatggcggtgcgcgcgcagttg
tccgctcgcggcgtgcgcagcgtgtatctgtcggaccgggagtcggtcttcgacagcccg
caggccggcgagctgcactgctggctggcggcctgcgccgatccggagaacgatcggctg
ttgcgcgccgcgctggcgaccccctcgctggggctgagctggcaggcgcttgaccgcctt
aaccacgacgagcaggagtgggaacgccgggtaatgcagtttgtccgttaccagagctgc
tggcgacagcagggcgtattgccgatgctgcggcggctaatgtgggaattcgatgtgccg
cgccggttgctggccgccgataacgcccgcgcgctgaccgatgtgctgcacctgtcggag
ttgctgcaacaggccagcgtacatctggacggcgagcacgcgctgatccgctatctggcg
gagcagtgccaggcggataatcccggcggcgacaccctgaaactgcggctggaaagcgat
gccgatctggtgaaggtggttaccgtccacaagtccaaagggctggagtatccgctggtg
tttctgccgtttgcctgcgcgtttcgtgccgtcagccagcgggatgtgccgctgaaattt
catgatgatgacgggcagccgcggcttgaactgatcgccagcgacgaggcggtgcgacgc
gccgaccatgagcggctgggcgaggacctgcgtaaattttatgtggcgctgacccgcgcc
cgctacgccatgtggctgggcatggcgccgttgaaagagctggaaaaaagcgcgcccggt
tacctgctcggcgccggtgaaccgttagacccggcgcaactggcgcaacagttgtcggcc
tggtgcggcgcggacagccagattacgccgttgccggaaacggacgaggacatttaccgc
cctgaacaggatacgtcggcgctggggcaggagccgccgttgccgaatatgcgcagccac
cgctggcgcattaccagctattccgggttgcaactggcgccggaggggcattaccgcgaa
tatcgtgagcctgctgcgggcgatgtgcccgaagtgcagagcgcgaagcaggaaaccttt
agcgaaccgcaggcaacagcggagcgtctgccgccgttgccgaccggccacgatatgtac
agttttccacgcggggcggcgccgggcagctttctgcacggcttgctggagtgggccgga
aaagagggctttgccgcgctggcggcggatcgatcccgggtggaggatcaggtggcgcgg
cgctgtaaccggcaaggctggacacagtggataccgatgcttaccgattggttgatggcg
ctgctcaatcagccgctggcgctgccgacgcagcccggcagcgcggtctcactggctggg
ttgacgcagtatcaggtggaaatggagttctggtttgcgctcagtcaggtcgacacgcaa
gtcttggatcaacaggtcagggccgccacgctggcgggcgaaccgcgagcgatgctgatg
cgagaacagcttaacggcatgctgaaagggtttatcgatttggtatttgaacatcagggg
cgctactacgtgctggactacaaatccaactggctgggggcggatgccgccgactatgac
ccaccgcgtatggcgcgcgccatgctggatcaccgttacgatctgcaactggcgttgtat
ctgtttgcgttgcaccgcttgctgaagtcccgcctgccggattacgactacgaccgccac
gtcggcggcgcgttatacctgtttttgcgcggcagtcaggcgccgggcggcggcgtctgc
gcccaacggccggacaaggcgctgattgacgcgctggagagcctgtttagcggcgaaacg
gaggcgacggcatga
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