Dickeya fangzhongdai ND14b: LH89_01675
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Entry
LH89_01675 CDS
T03347
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ced03032
]
LH89_01675
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_01675
Enzymes [BR:
ced01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LH89_01675
DNA replication proteins [BR:
ced03032
]
Prokaryotic type
DNA Topoisomerases
LH89_01675
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LH89_01675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
E217_gp28
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AIR67976
LinkDB
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Position
complement(392426..395029)
Genome browser
AA seq
867 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSASKKSAEANGEKAKKA
VKKDEKTALVNRMGVDPYRGWQAQYEILPGKEKVVSELKTLAQNAEHVYLATDLDREGEA
IAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFDNPGELNINRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANPEIALQMQV
THHNGKPFRPVNQAQTQAAVSLLEKASYVVAEREDKPTSSKPGAPFITSTLQQAASTRLG
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALAMARDYIHDEFGKRYLPEAPNLYTSK
ENSQEAHEAIRPSDVKVLADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAG
DYQLRAKGRTLRFDGWTKVMPALRKSDEDRTLPAVDVGQSLSLEKLLPSQHFTKPPARYS
EASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELM
NYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAELEPDEGGMKPNQMVLTSID
CPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAETNALRA
RRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECEKCGSEM
HLKMGRFGKYMACTSESCGNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELVRFRDRLPEKLRYLAEAPVTDPEGNKTLVRFSRKTKQQ
YVSSEKEGKATGWSAFYVDGKWVESSR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtac
cttggcaatgattacgtggtgaaatccagcgtggggcatgtacgcgacttgccgaccagc
ggctccggttcggcgagcaagaaaagcgctgaggccaacggggagaaagccaaaaaagca
gtcaagaaagatgaaaaaaccgcgctggtcaaccgcatgggggtggatccctatcgcggc
tggcaggctcagtatgagattctgcccggcaaggaaaaagtcgtatcggaactgaaaacg
ctggcgcagaacgccgagcacgtctatctcgcaaccgaccttgaccgcgaaggggaagcc
attgcctggcacctgcgggaaatcatcggtggcgacgataagcgtttcagccgcgtggtg
ttcaacgagatcaccaaaaacgccattcgtcaggcgttcgacaatccgggcgagctgaat
atcaaccgtgtcaacgcccagcaggcccgccgtttcatggaccgcgtggtgggttacatg
gtatcgccgctgctgtggaaaaagattgcccgtgggctgtccgccggtcgcgtacagtca
gtggcggtacgtctggtggtggagcgcgagcgagaaatcaaagcgtttgtgccggaagaa
tactgggaattgcacgccgatttgctggcgaacccggaaatcgcgctgcagatgcaggtg
acacaccacaacggcaaaccgttccggccggtgaatcaggctcagacgcaagcggcggtc
agcctgctggaaaaagccagctatgtggtggctgaacgggaagacaaaccaaccagcagc
aaaccgggcgcgccgttcattacctctacgctgcagcaggccgccagcacccgtctgggc
ttcggcgtgaaaaagaccatgatgatggcgcagcggttgtatgaagccggccatatcact
tacatgcgtaccgactccaccaacctgagtcaggatgcgctggcgatggcgcgtgattat
atccatgacgaatttggcaaacgctatctgccggaagcgcccaacctttacaccagcaag
gaaaactcgcaggaagcgcacgaagccattcgtccttccgatgtgaaggtgttggccgac
cagctcaaagacatggaagcggatgcgcaaaagttgtatcagctgatttggcggcagttt
gtggcctgtcagatgatgccggctcaatatgattccaccacgctggtggtcagcgccggc
gactatcagctgcgtgccaaagggcgtactctgcgcttcgacggttggactaaagtgatg
ccggcgctgcgcaagagcgacgaagaccgtacgttgccggccgtcgacgtggggcaatcc
ctgtcgctggaaaaactgttgccaagccagcactttaccaaaccgccggcgcgttacagc
gaagcatcgctggtcaaggagctggaaaagcgtggtatcggccgtccttccacgtatgcc
gccatcatctccaccattcaggatcggggttatgtgcgggtggaaaaccgccgtttctac
gccgagaagatgggggagatcgtgaccgatcggctggaggataacttccgcgagctgatg
aactacgattttaccgcccgtatggaaaatagcctcgacctggtggcgaacagccaggcc
gagtggaaagcggtgctggatgaattcttcgccgaattcagcaaacagctggaaaccgcc
gagctggagccggacgaaggcggcatgaagccgaaccagatggtgctgaccagcattgat
tgcccgacctgcggccgaaaaatggggatccgtaccgccagcaccggggtgttcctcggc
tgttccggttatgcgctgccgcccaaagagcgctgcaaaaccaccatcaacctgattccg
gaagcggaagtgttgaatgtgctggagggcgatgaggcggaaaccaatgcgttgcgcgcc
cgtcgccgttgctcgaaatgcggtacggcgatggacagctacctgatcgacaatcagcgt
aaactgcatgtgtgcggcaacaacccgtcctgcgatggctatgagatcgaacaaggcgag
ttccgcctcaaaggctatgacggcccggtggtggaatgcgagaagtgcggttcggaaatg
cacctgaaaatggggcgtttcggcaaatatatggcctgtaccagcgaaagctgcggcaat
acccgcaaaattctgcgtaacggggaagtggcgccgccgaaagaagatccggtgccgttg
ccggagctgccatgcgagaaatccgacgcctattttgtgctgcgcgatggtgccgccggc
gtgttcctggcggccaataccttcccgaaatcgcgtgaaacccgcgcgccgttggtggaa
gaactggttcgtttccgcgatcgcttgccagagaaattacgctatctggccgaggcgccg
gtgaccgacccggaaggtaacaaaacgctggtgcggttcagccgcaaaaccaaacagcag
tatgtttcctctgaaaaagagggcaaagctaccggatggtcggcattttatgtggacggc
aaatgggtggaaagcagccgctaa
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