Dickeya fangzhongdai ND14b: LH89_02585
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Entry
LH89_02585 CDS
T03347
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LH89_02585 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_02585 (sbcB)
Enzymes [BR:
ced01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LH89_02585 (sbcB)
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LH89_02585 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LH89_02585 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH89_02585 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AIR68146
LinkDB
All DBs
Position
593426..594856
Genome browser
AA seq
476 aa
AA seq
DB search
MQNQHTEPTFFVHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDP
EAVMITGITPQVAQSRGIREAEFARHIHEAFSEPGTCIMGYNNIRFDDEVSRNLFYRNFY
DPYAYSWQNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAH
DAMSDVYATIAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARG
NTSWIVPLAWHPDNRNAVIVCDLAGDIQPLLELNADELRTRLYTRRALLAEDESPVPIKL
VHINKCPVLAPASTLRPEDAERLGIDRQHCLNNLQLLRQHGSVREKVVALFADAPPFEAS
TDVDLQLYDGFFSDADRAAMDIIRKTGSQHLPALNLQFADRRVEELLFRYRARNFPGTLD
EQEQQRWLAHRREVFTPERLQSYSDLLESLYQQYADDEKKTALLKALVAYAQRLVA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaatcaacacaccgaacccacttttttcgttcatgactatgaaacctttggcaaa
catccggccaaagatcgcccggcgcagttcgccggcgtccgtaccgatttgaattttaac
gtgattggcgagccggtggtgatctactgccagccaaccgacgattacctgcccgacccg
gaagcggtgatgattaccggcatcacgccacaggtggcgcaaagccgtgggatacgcgaa
gcggagttcgcccgccatatccatgaggcgttcagcgagccgggcacctgcatcatgggg
tacaacaacattcggtttgatgacgaagtcagccggaatctgttttatcgcaacttctac
gatccttacgcctacagctggcaaaacggcaactctcgctgggatttactggacatgctg
cgggcgtgctatgccttgcgcccggatggcattgtctggccggaaaacgacgacggtttt
cccagtttcaggctggaacatctgacgcgcgccaatggcgtcgaacacactcaggcgcac
gacgccatgtcggatgtgtatgccactatcgccatggcgcgcctgctcaaacagtcgcag
ccgaaactgttcgactatctctatgcgttgcgtaacaaaaataaagtcagcgcgttaatc
gatattccgcaaatgaaaccgctggtacacgtttccggcatgtttggcgccgcgcgcggt
aatactagctggattgtgccgctggcctggcatccggataaccgcaacgcggtcatcgtc
tgcgatctggcaggcgatattcagccgttgctggagctgaatgcggatgaactgcgcacc
cggctctatacccgccgtgcgctgctggcggaagatgaatcgccggtgccgatcaaactg
gtgcatatcaataaatgcccggttctggcaccggccagcacgttgcgtccggaagacgca
gagcggctgggcattgaccgtcagcactgcctgaacaatctgcaactgctgcgtcagcat
ggcagcgtacgggagaaagtggtggcgctgtttgccgatgccccgccgtttgaagcctct
accgatgtggacctgcaactgtacgatggttttttcagcgacgccgatcgggccgcaatg
gacatcatccgtaaaaccggctcccagcaccttccggccctgaaccttcagtttgccgat
cgccgggtggaggaattgctgttccgctaccgggcgcgcaatttccccggcacgcttgat
gagcaggagcagcagcgctggctggcgcatcgtcgagaagtctttaccccggagcggttg
cagtcttattcggatttgctggagagtttgtatcagcaatacgcggatgacgagaaaaaa
accgcgctactaaaagcactggttgcctatgcccaacggctggtcgcctga
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