Dickeya fangzhongdai ND14b: LH89_03840
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Entry
LH89_03840 CDS
T03347
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH89_03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_03840
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH89_03840
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH89_03840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
UvrD-helicase
AAA_30
UB2H
AAA_22
DUF87
DUF4686
Motif
Other DBs
NCBI-ProteinID:
AIR68384
LinkDB
All DBs
Position
complement(868555..870567)
Genome browser
AA seq
670 aa
AA seq
DB search
MSKAFKLHSDFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YARNDQAFSRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPR
YTIYPKTHYVTPRERILQAMEEIKVELAERRQVLLAGNKLLEEQRLAQRTTFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLD
PELEVRPVTTQVDDLLSEIRKRSVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYADKITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIG
QPTNGRGKGRGKKAAEPAAHYQQLSPKALDQKIRELESQMLAHAQNLEFEEAARLRDEIH
ALREQFIAAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagcgttcaaactgcattctgatttcaaacccgccggcgatcagcccgaggcg
atacgccgcctggaagaagggctggaagacggactggcgcaccagacgctgctgggggta
acggggtccggtaaaacgttcaccatcgccaacgtgattgccgacctcaaccggccgacg
atggtgctggcgcccaacaagacgctggcggcgcagttgtatggcgagatgaaagcgttt
tttccggataatgcggtggagtatttcgtctcttactacgactactaccagcccgaagcc
tacgtgccgagttcggacaccttcatcgagaaggacgcctcggtcaacgaacacatcgaa
cagatgcggttgtccgccaccaaggcgctgctggagcggcgcgacgtggtggtggtggcg
tcggtgtccgccatttacggtctgggcgatccggacctgtatctaaagatgatgctgcac
ctgactcagggcatgctgatcgaccagcgcgccatcctgcggcggctggcggagttgcag
tacgcccgcaacgatcaggcgttttcgcgcggcacctttcgcgtgcgcggcgagatcatc
gatatttttccggcggaatctgaagacatcgccctgcgggtggaactgttcgacgaagag
gtggagcggctatcgctgtttgacccgctcaccgggcatattgtgcagacggtgccgcgt
tacaccatctaccccaaaacccactacgtcacgccgcgcgaacgcatcctgcaggcgatg
gaagagatcaaggttgagctggcggagcgccgtcaggtactgctcgccggcaataagttg
ctggaagaacagcggctggcgcagcgcaccaccttcgatctggagatgatgaatgagctg
ggctattgctccggcattgaaaactactcccgctttctgtccggccgtgggccgggcgag
ccgccgccgacgctgttcgattacctgccggccgacggtctgctggtgatcgacgaatcc
cacgtcaccattccgcagctgggcgggatgtaccgcggcgaccgggcgcgcaaggaaacg
ctggtggagtatggctttcgcctgccgtcggcgctggacaaccggccgatgaaattcgag
gagttcgaagcgctggcgccgcagacaatctatgtgtcggcgacgccgggcaattacgag
ctggaaaaatccggcggcgaggtgatcgatcaggtggtgcggccgaccggtctgctggac
ccggaactggaagtccgcccggtgaccacccaggtggatgatttgctgtcggaaattcgc
aaacgctccgttatcaacgagcgcgtgctggtcaccaccctgaccaagcggatggcggaa
gacctgaccgagtatctggaagagcacggcgagcgggtgcgttatctgcactctgatatt
gataccgtggagcgggtggagatcatccgcgatttgcgtctgggcgagttcgatgtgctg
gtgggcatcaacctgctgcgtgaaggtctggacatgccggaagtgtcgctggtggcgatt
ctggatgccgataaggaagggttcctgcgttcggaacgatcgctgattcagaccatcggc
cgggcggcgcgtaacctcaacggcaaggcgattttgtatgccgacaagattacgccgtcg
atggaacgcgccatgaatgagacccagcgccgtcgcgagaaacagcaggcatacaacgag
caacatggcatcgtgccgcagggccttaacaagaagattggcgacatcctgcagattggt
cagccgactaacggccggggcaaagggcgcggcaaaaaagcggccgaaccggcggcgcat
taccaacaactgtcgccaaaagcgctggatcaaaaaatccgcgagctggaaagtcagatg
ctggcccatgcgcagaatctggaattcgaggaagccgcccggctgcgcgacgagatccac
gcgctgcgcgaacagtttatcgccgcgtcatga
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integrated database retrieval system
