Dickeya fangzhongdai ND14b: LH89_06900
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Entry
LH89_06900 CDS
T03347
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_06900
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LH89_06900
Archaeal homologous recombinant proteins
LH89_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
cobW
AAA_21
NTPase_1
nSTAND3
zf-Mss51
GTP_EFTU
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIR68955
LinkDB
All DBs
Position
1588279..1591962
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNSLQGEWKIDFTREPFASNSLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVGPSQNELMTRHTAECLAEVEFEVKNVAYRAFWSQRRAHNSPEGNLQPPKVELALCAD
GKILTDKVNDKLTMIADITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELLEELTGTDI
YGQISERVFEKHKDAQSKLETLRAQVATLELLSDEQRQALEQQLEAIRQQEQSLSLHREE
VLGHQRWYDTLLQLQQAQQQAQQQRAAQEQLQQQSQSQLDKLQRSEPAEKLRPRFDERER
ALREKQRLTQQLNSVRQQISRQQDALNLLKIQLEKAQATRQQHAEHRQQQETLINERILP
LDHHIATQQAQRAQQQQALDNLLEQQKTLIASLTRLQRQQEQTRQRLEDIENYRQQHSRH
QHLGSHIPLWQAQFPQQQKWQQDLQVLQEKAAQQQIQAEYLDQQRASLAEKHQAQQSACE
RASQLLTEHLQQDEQLEAEQPLADLRQQLARLMAERPDRQQLATSAAVLQQLISQRTLLE
AQQLDTQRRIQALEDQQTHQRQDYQRQADHLADLDKRHELELRIVSLERERQQLQPGKEC
PLCGSPHHPAVERYQALRPSETQLRLHALRQEVEALKASVVQTETQLQLQKQHRLQQQNA
LDGVRRDYESLQLQCKSVSERLLVDFDPLQLPALHQWIEESNVQEQSLQAQIASRERNQR
HIQESKDLLTSAQQLLAQTVQQLELNTQQQSSLHASREELRLLLEKTERELQRLHDSLSQ
TLETFELTAPTLAQQEDWLRQRQTEWLRWQENEHEQHQCQPQLAALEAEIIASQQRQEET
DAAIKTYQQQLADTQRSLEQAQQQRWQLMGNQAVNEVLKQLRQVSQTLELESQQAQQQWQ
QGQSLHSRLNGEIGSLEQQNQHAETALQQLQTGFAEELAAAGFADEAAFRHALLAEAERH
HLLTLKERLSQRQQQVDALQQQADSALEQHMTTRPESMPEGISDHDIRQLLSGLGDMVKA
EAAHQGELRQQLASDQQRRDKQRLLLEAIARGQQQCDDWGYLNQLIGSQKGDKFRRFAQG
LTLDHLVFLANRQLSRLHGRYLLQRKASDTLELQVADTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSTKTRIDSLFLDEGFGTLDGETLDTALDVLDNLNASGKSIGVISHVEAMK
DRIQVQIRVRKRNGLGVSQLDSAYAVK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttagcctgcgcctgaaaaacctcaactcgctgcagggcgagtggaaaatc
gatttcacccgcgagccgttcgccagcaacagcctgttcgccatcaccggccctaccggc
gcaggtaaaaccacgttgctggacgccatctgcctcgcgctgtaccaccagacgccgcgc
ctgaaggtcggccccagccagaacgagctgatgacgcgccacaccgccgaatgtctggcg
gaagtggaattcgaggtgaagaacgtcgcctaccgcgccttctggagccagcgccgcgcc
cataacagcccggaaggcaatctgcagccgcccaaggtggagctggcgttatgcgccgac
ggcaaaatcctcaccgataaggtgaacgataagctgacgatgattgccgatatcaccgga
ctggatttcgatcgtttcaccaaatcgatgatgctgtcccaggggcagttcgccgctttc
ctaaacgccgatgccaatcagcgggccgaactgctcgaagagctgaccggcaccgacatt
tacggccagatttcggagcgggtattcgagaaacacaaagacgcccagagcaagctggaa
accctgcgggcgcaggtcgctacgctggaattgctgagcgacgaacagcgccaggcgctg
gagcagcagttggaagccatccgccagcaggaacaatcgctgtcattgcaccgggaagag
gtgttggggcatcagcgctggtacgatacgctgctgcagctccagcaagcgcaacagcag
gcccagcagcagcgcgccgcgcaggaacaattgcagcaacaatcgcaatcgcagttggat
aaactacagcgcagcgaaccggcggaaaaactgcgtccgcgctttgatgaacgcgagcgc
gcgctacgggaaaaacagcgcctgacccagcagttaaatagcgtccgccaacagatcagc
cgccagcaggatgcgctcaatctgttgaaaatccagctggaaaaagcgcaggccacccga
cagcagcacgccgagcatcgccagcaacaggaaaccttgatcaatgaacgtatcctgccg
ctcgaccatcacatcgccacccagcaggcccagcgcgcccagcaacagcaagcgctggat
aacctgctggagcagcagaaaacgctgatcgccagcctgaccagactacagcgccagcag
gaacagacacggcaacggctggaagacatcgaaaactatcgccagcagcatagccgccac
cagcatttgggcagccatattccgctgtggcaggcgcaatttccccagcagcagaaatgg
cagcaggacttgcaggtgctgcaggaaaaagcggcgcagcagcagattcaggcggaatac
cttgaccagcagcgcgcctcgctcgccgaaaaacatcaggcgcagcaaagcgcctgcgag
cgagcgagccaactgctgaccgagcacttgcagcaggatgaacagctggaagcggagcaa
ccgctggcggacctacgccagcaactggcccggctcatggccgaacggccggatcgccaa
caactggccaccagcgccgccgtgctacagcagttgattagccagcgcaccctgctggaa
gcgcaacagctggacacccaacgccgcattcaggcgctggaagatcaacagacccatcag
cgtcaggactatcagcgtcaggccgaccatctggccgacctcgacaaacgccacgaactg
gagctgcgcatcgtcagtctggaacgcgagcgccagcaactgcaaccgggcaaagagtgc
ccgctgtgcggctccccgcatcatccggcggtggaacgctatcaggcactgcgtccttcg
gaaacccagctccggctgcatgcgctgcgtcaggaggtggaggcgctgaaagccagtgtg
gtgcagaccgaaacccagcttcagttacaaaaacagcaccgcctgcagcagcaaaacgcg
ctcgacggcgtccgacgcgattacgagtcgctgcagttgcagtgcaaatcagtcagtgaa
cgcttactcgttgatttcgatccgctgcaactgccggccctgcatcagtggattgaagaa
tccaacgtgcaggagcagtcgctgcaagcgcagatcgccagtcgtgagcgtaatcagcgc
catattcaggaaagtaaggatttactcacctcggcgcagcaactgctggcgcaaaccgta
cagcagctggagctgaacacccagcaacagtcgtcgctgcacgcctcgcgggaagaactg
cggctgttgctggaaaaaaccgaacgcgagttgcaacgcctgcacgacagcctcagccag
acgctggaaacgttcgaactgacggcgcctacgctggcgcagcaggaagactggctgcgt
cagcgccagacggaatggctgcgctggcaggaaaacgaacacgaacagcatcagtgccag
ccgcaacttgccgcgctggaagcggaaatcatcgccagccagcagcggcaggaagaaacc
gacgccgccatcaaaacctatcagcagcaactggccgacacccaacgctccctggaacag
gcgcagcaacagcgctggcaattgatgggcaatcaggcggtgaatgaggtgctgaagcag
ttgcggcaggtcagccagacgctggagctggaaagccagcaggcgcagcagcagtggcaa
cagggccagtcgttgcacagccgcctgaacggggaaatcggcagtctggagcagcaaaac
cagcatgccgaaaccgcattgcagcagcttcagaccggatttgcggaagagctggccgcc
gccggattcgccgatgaagctgccttccgccatgccttgctggccgaggccgagcgccat
catctcctcacgctaaaagagcggctcagccagcgtcagcagcaggtggatgcgttgcag
cagcaggcggacagcgcgctggagcaacacatgaccacccggccggaatcgatgccggaa
ggcatcagcgaccatgacatccgtcagttgctttccggcctcggggacatggtaaaagcc
gaagccgcacatcagggcgaactgcgccagcagcttgccagcgatcagcaacgccgcgac
aaacagcgcctgttgctggaggccatcgcccgcggtcagcaacagtgcgacgactggggc
tacctcaatcagttgattggctcgcagaaaggcgacaaattccgccgcttcgcgcagggg
ctgacgctggatcatctggtgtttctggccaaccgccagctgtcgcgtctgcatgggcgc
tacctgctgcagcgcaaggcatccgacacgctggaattgcaggtggccgatacctggcag
gccgacgcggtacgcgatacccgcacgctgtccggcggcgaaagttttctggtcagcctg
gcgctggcgctggcgctatccgatctggtcagcaccaaaacccgcatcgactcgctgttc
ctcgacgaaggttttggcacgctggacggcgagacgctggataccgcgctggacgtactg
gataacctgaatgcttccggcaagagcatcggcgtcatcagtcacgtggaggcgatgaaa
gatcgtatccaggtgcaaatccgggtcagaaagcgcaacggtctgggcgtcagccagctc
gacagcgcgtatgcggtgaaataa
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integrated database retrieval system
