Dickeya fangzhongdai ND14b: LH89_07205
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Entry
LH89_07205 CDS
T03347
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03030
DNA replication
ced03430
Mismatch repair
ced03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH89_07205 (dnaE)
03430 Mismatch repair
LH89_07205 (dnaE)
03440 Homologous recombination
LH89_07205 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ced03032
]
LH89_07205 (dnaE)
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_07205 (dnaE)
Enzymes [BR:
ced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LH89_07205 (dnaE)
DNA replication proteins [BR:
ced03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LH89_07205 (dnaE)
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LH89_07205 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
AIR69009
LinkDB
All DBs
Position
complement(1656165..1659647)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGA
GIKPIIGADFYLQSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGAAGPTIDRAW
LVEYQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELIRTGRPDEES
YLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPRNYSVQQYM
RSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDYLVMCSRKGL
EERLEFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLEPVDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKEGSEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLVDAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEVMLFTDALEKYQHLLEQDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRQDARARLRFGAAWRITPTD
GLLNDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggcgaaaaccggcccgttggtaaaaaaagcggctgcgctggggatgccggcgctggcg
atcaccgattttaccaacctgtgcgggctggtgaaattctatggcggcgcgcacggcgcc
ggcatcaagccaatcatcggtgcggatttttatctgcagagtgaagagctgggcgatgaa
ctggcgcacctcaccattctggcgatgaacaacgaaggttatcagaacctgacgctgttg
atttcccgcgcctatcagcgcgggtacggcgccgccgggcccacgattgatcgggcatgg
ctggtggagtatcaggccgggttgctgctgttgtccggcgggcgccacggcgacatcggc
aagtttctgctgcgcggcaatcaggtgctggtggaacagagcgtcgccttttatcagcag
cattttccacagcggttttatctggagctgatccgtaccggtcggccggatgaggaaagc
tacctgcatgcggcggtggaactggcgaccgctcacggcttgccggtggtcgccaccaac
gatgtctgttttatcagtcaggatgatttcgaggcccatgagatccgcgtggcgattcat
gacggcttcacgctggacgacccgaaacgcccccgaaattatagcgtgcagcagtacatg
cgcagcgaggaggagatgtgcgagctgtttgccgatatccccgaagcgctcatcaacacc
gtggagatagccaaacgctgtaatgtcaccattcggctcggcgagtatttcctgccgcaa
ttccctaccggcgacatgtcgaccgaagactatctggtgatgtgctcccgaaaagggctg
gaagaacgactggaattcctgttcccggatgaagaggttcgcgcccagcgccgcccggaa
tacgacgaacgtctggaaatcgaactcaacgtcatcaaccagatgggttttcccggctac
ttcctgatcgtaatggagtttatccagtggtcgaaggacaacgacgtgccggtagggccg
ggacgtggttcaggcgccggctcgctggtggcgtatgcgctgaaaatcaccgatctggat
ccgctggagtttgacctgctgttcgaacgcttccttaacccggaacgcgtttcgatgcct
gactttgacgtcgacttctgcatggaaaaacgcgatctggtgattgatcacgtggcggac
atgtacggccgcgacgcggtgtcgcaaatcatcaccttcggtaccatggctgccaaagcg
gttatccgcgacgttggccgggtgctggggcatccgtacggctttgtcgaccgcatttcc
aaactggtgccgcccgatcccggtatgacgctggagaaagccttcgccgcggaaccgcag
ctgggcgaaatttacgaggcggacgaagaggtcaaggcgctgatcgacatggcgcgcaaa
ctggaaggggtaacccgcaacgccggtaagcacgccgggggcgtggtgatttcgcctacc
aaaattaccgattttgcgccgctgtactgcgacccggaaggcaaccacccggtcacccag
ttcgataaaagcgacgtggaatacgccggtctggtgaaattcgacttcctcggcctgcgc
acgctgaccatcatcaactgggcgctggagatgatcaacgcccggcgcgccagacaaggg
ctggagccggtggatatcgccgccatcccgctggatgacaagaaaagtttcgatatgctg
cagcgctcggaaaccacagcggtattccagcttgaatcgcgcggcatgaaagacctgatc
aaacgccttaagccggactgctttgaggatatgatcgcgctggtggccctgttccgtccg
gggccgctgcagtcgggcatggtggataactttatcgaccgtaaacacgggcgtgaagag
atttcctacccggatatccagtggcagcatgagacgctgaaaccggtgctggaaccgacc
tatggtattatcctgtatcaggaacaggtgatgcagattgcccaggtgctggcagggtat
accctcggcggcgcggatatgctgcgccgtgcgatgggtaagaaaaagcccgaagagatg
gccaagcagcgctcggtgtttaaagagggctcggagaagatgggcgtcgacggcgagctg
tcgatgaaaatctttgacctggtggagaagttcgccggttacggcttcaacaagtcgcat
tcggccgcctacgcgctggtatcgtatcaaacgttatggctgaaggcccattatccggcg
gagttcatggcggcggtgatgaccgcggatatggacaacaccgacaagatcgtcggattg
gtggatgaatgctggcgtatggggctgaagatcctgccgccggacatcaacagcggtctg
taccattttcacgtcaacgatgacggtgagatcgtctacggcatcggcgccatcaaaggc
gtgggtgaagggccgatcgaagccatcattgaggcgcgtaataacgatggttatttccgc
gatttgtttgatctctgcgcccgtaccgatatcaaaaagctgaaccggcgggtgctggaa
aagctgattatgtccggcgcgtttgaccggctgggaccgcaccgggcggcgttgatgaat
tcgctggtggacgccatgaagtcggcggaacagcacgcgaaagcggaggccatcggtcag
gcggatatgttcggggtgctggcggaaacgcctgagcaggtggagcagtcctacagtacg
gtgccgccgtggccggagcaggtggtgctggacggcgaaagggaaacgttggggttatac
ctgaccggacaccccatcaaccagtatctgaaggaaattgaacgctatgcgggaggcgta
cgtttaaaagacatgcaccccacggagcggggaaaaatgaccactgccgtcgggctggtg
cttgccgcccgggtgatggtgaccaaacggggcaaccgtattggcgtctgtacgctggat
gatcgttccggtcgtctggaagtgatgctgtttaccgacgcgctggaaaaatatcagcac
ctgctggagcaggatcgcattttgattgccagcggacaggtcagctttgatgacttcagc
ggcggacttaaaatgacggtcagagagttaatggatatcagcgaagcgcgggaaaaatac
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagttgttaaaccgt
ctccgtcagtcgttggaaccccatcgatcggggacgattccggtgcatctctactaccag
cgccaggatgcgcgtgcccggctacgttttggtgcggcatggcgtatcacgcccaccgat
gggttgctgaatgatttacgtaccctggttggtaatgaacaggtagaactggaatttgac
taa
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