Dickeya fangzhongdai ND14b: LH89_07780
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Entry
LH89_07780 CDS
T03347
Name
(GenBank) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
LH89_07780
Enzymes [BR:
ced01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
LH89_07780
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
CarbopepD_reg_2
Rhamnogal_lyase
BcsB
Motif
Other DBs
NCBI-ProteinID:
AIR69111
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Position
1795157..1796869
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AA seq
570 aa
AA seq
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MWRTPLLALALVLPLTATGAVKLTLDGMNSTLDNGLLKVRFGADGSAKEVWKGGTNLISR
LSGAARDPDKNRSFYLDYYSGGVNEFVPERLEVIKQTPDQVHLAYIDDQNGKLRLEYHLI
MTSDVSGLYSYVVAANTGSAPVTVSELRNVYRFDATRLNELFNSIQRGTPLLYDELEQLP
KVQDETWRLPDGSVYSKYDFAGYQRESRYWGVMGNGYGAWMVPASGEYYSGDALKQELLV
HQDAIILNYLTGSHFGTPDMVAQPGFEKLYGPWLLYINQGSDRELVADVSRRAEHERASW
PYRWLDDARYPRQRATVSGRLRTDAPHATVVLSSSTENFDIQTTGYLFTARTNRDGRFSL
RNVPPGEYRLSAYADGGTQIGLLAQQTVQVEGKKTRLGQIDAPRPAPLAWAIGQADRRAD
EFRFGDRPRLYRWQTEVPANLTFEIGKSRERKDWYYAQTQPGSWHILFNTRTPEQPYTLN
IAIAAASNSGMTTPASSPQLAVKLNGQLLTTLKYDNDKAIYRGAMQSGRYHEAHIPLPAG
ALQQGGNRITLELLGGMVMYDAITLTETPQ
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atatggcgtaccccgctactggcgctggcactcgtgctgccgctgacggcgacgggcgcg
gtgaaactgacgctcgacggcatgaacagcacgctggacaacgggctgttgaaagtccgc
tttggcgcggacggcagcgccaaagaagtgtggaaaggcggcaccaacctgatttcccgt
ctctccggcgcggcgcgcgatccggataagaaccgcagcttttacctcgattactactcc
ggcggcgtcaacgaattcgtgccggaacggctggaggtcatcaaacagacgccggatcag
gtgcacctggcctacatcgacgaccagaacggcaaactgcggctggaatatcacctgatc
atgaccagcgacgtcagcggcctttacagttatgtggtggccgccaacaccggctcagcg
ccggtgacggtcagcgagctgcgcaacgtttaccgtttcgacgccacccggctgaacgag
ctgttcaatagcatccagcgcggtacgccgttgctgtacgatgaactggaacagttgccg
aaggtgcaggatgaaacctggcgactgccggacggcagcgtctactctaaatacgatttc
gccggttatcagcgcgaaagccgctactggggcgtaatgggcaacggttacggcgcctgg
atggtgcccgccagcggcgagtattactcgggcgacgcgctgaagcaggaactgctggtg
catcaggacgcgattatcctgaactatcttaccggctcgcatttcggcaccccggatatg
gtggcgcagccgggttttgaaaaactctacggtccgtggctgctgtacatcaatcagggc
agcgatcgggaactggtggcggacgtcagccgccgggccgaacatgaacgcgccagttgg
ccttaccgctggctggacgatgcgcgctatccgcgccagcgcgctaccgtcagcggtcgc
ctgcgtaccgatgcgcctcacgccacggtggtgctgagcagcagcactgaaaacttcgac
attcagaccaccggttacctgttcaccgcccgtaccaatcgggacggccgtttcagcctg
cgcaatgtgccgccgggcgaataccggctgtcggcctacgccgatggcggcacgcaaatc
ggcctgctggcgcagcagaccgtgcaggtggaaggcaagaaaacccggctcggtcaaatt
gacgccccgcgccccgcgccgctggcgtgggctatcggtcaggccgaccgccgggccgac
gaattccgcttcggcgatcgcccgcgcctttatcgctggcaaaccgaggtgccggccaac
ctgaccttcgagatcggcaaaagccgtgaacgcaaggactggtactacgcccagacccag
cccggcagttggcacattctgttcaacacccgcacgcccgagcagccttacaccctgaat
atcgccatcgccgccgccagcaacagcgggatgaccacgccggccagttcgccgcaactg
gcggtgaaactcaacggtcagctgctgactacgctgaagtacgacaacgacaaggctatc
taccggggcgcgatgcaaagcggacgctaccatgaagcgcatataccgctgcccgcgggc
gcgctgcaacagggcggcaaccgcatcacgctggaactactgggcggcatggtgatgtac
gacgccatcacgctgacggaaacgccgcaataa
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