Dickeya fangzhongdai ND14b: LH89_09105
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Entry
LH89_09105 CDS
T03347
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH89_09105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_09105
03009 Ribosome biogenesis [BR:
ced03009
]
LH89_09105
Enzymes [BR:
ced01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH89_09105
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH89_09105
Ribosome biogenesis [BR:
ced03009
]
Prokaryotic type
rRNA helicases
LH89_09105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AIR69350
LinkDB
All DBs
Position
complement(2097920..2099800)
Genome browser
AA seq
626 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKLTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLSKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVVERRPRREFRERDERFERRGDRNDRGPRSDERPARRER
RDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD
LLSHFTRTRILNKPMNMQLMGDAQPHERRERREGGERGDRGARGFGERAGAGNGRGRPFN
GERREGGERRGGSRDGQRAPRRFSNA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagtctggggctgtccgctccgattctgaatgca
ctgtctgagatggggtacgaaaagccgtccccgattcaggcggaatgtattcctcatctg
ctcaacgggcgcgacgtactgggtatggcgcagaccgggagcggcaagaccgcggcattt
tccctgccgctgctgaacaatatcaaggctgacctgaaagcgccgcaattgctggtgctg
gcgccgacccgtgagttggcggtgcaggttgcggaagcctgtaacgaattttccaaacat
atgcagggcgtcaatgtggtggcgctgtatggcggccagcgttatgacgtgcagttgcgc
gcgttgcgtcagggaccgcagattgtcgtcggtactccgggacgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagcggtctggtgctggacgaagctgacgaa
atgctgcgcatgggcttcatcgaagatgtggaaaacatcatggcgcagatcccggctgaa
catcagacggcgctgttctccgccaccatgccggaagcgattcgtcgtatcacccgtcgt
ttcatgaacgatccgcaggaagtccgcattcagtccagcgtgacgactcgtccggatatc
agccagagctactggacggtatacggcatgcgtaaaaacgaagcgctgatccgtttcctg
gaagcggaagattttgatgcggcgatcattttcgtgcgcaccaagaacgccacgctggaa
gtggccgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggcgacatgaat
caggcgctgcgtgaacaaacgctggagcgcctgaaagacggtcgtttggatatcctgatc
gcgaccgacgttgccgcgcgtggtctggatgtcgatcgtatcagcctggtggtgaactac
gacatcccgatggattccgagtcttacgtacaccgtatcggccgtaccggtcgtgctggt
cgtgccggacgcgcgctgctgttcgtggaaaaccgcgagcgccgcctgctgcgcaacatt
gagcgcatcatgaagctgacgattccggaagtggatctgccgaacgccgaactgctgggg
cagcgccgtctggcgcagtttgccgccaaagtacagcaacagctggaaagcagcgatctg
gatatgtaccgtgcgctgctcagcaagttgcagccgcaggaagagctggacattgaaacg
ctggcagccgcgctgctgaagatggcgcagggcgaacgtccgctgattctgccgccggat
ccggtggttgaacgtcgtccgcgtcgtgaattccgcgaacgcgatgagcgcttcgaacgt
cgtggtgaccgtaacgatcgtggtccgcgtagcgatgagcgtccggcccgtcgtgagcgt
cgtgacgtcggcgaaatggatctgtatcggatcgaagtgggtcgtgacgatggcgtggaa
gtgcgtcatatcgtgggcgcgattgctaacgaaggcgacatcagcagccgttacatcggc
aacatcaaactgtttgcctcgcattccaccattgagctgccgaaaggcatgccgggcgat
ctgctgtcgcacttcacccgcacgcgtattctgaacaagccgatgaatatgcaactgatg
ggcgatgcacagccgcatgaacgccgtgagcgtcgtgaaggcggtgagcgcggcgatcgt
ggtgctcgcgggttcggcgagcgtgccggtgccggcaatggccgcggtcgtccgttcaat
ggcgaacgtcgtgaaggcggcgaacgtcgtggcggcagccgtgacggtcagcgcgcgccg
cgccgtttcagcaatgcctga
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