Dickeya fangzhongdai ND14b: LH89_09115
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Entry
LH89_09115 CDS
T03347
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH89_09115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_09115
03016 Transfer RNA biogenesis [BR:
ced03016
]
LH89_09115
Enzymes [BR:
ced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LH89_09115
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LH89_09115
Transfer RNA biogenesis [BR:
ced03016
]
Prokaryotic type
tRNA degradation factors
LH89_09115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_PDCD11
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AIR69352
LinkDB
All DBs
Position
complement(2100993..2103113)
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKQAKPGQDFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEVNV
ELHNRVQALSEARLGDAYRITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISSPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEANAQSQETVQVSEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgtgacactggaaacc
ggcatgatggctcgtcaggccactgccgccgtgatggtcagcatggatgacaccgcggta
ttcgtgaccgtggtaggtgccaaacaggccaaaccgggtcaggattttttcccgctgacc
gttaactatcaggagcgtacctacgctgctggccgcatccccggtggtttcttccgtcgt
gaaggccgtccgagcgaaggcgaaactctgatttcccgtctgatcgaccgtccgattcgt
ccgctgttcccggatggttttgttaatgaagtgcaggttatcgccaccgtagtttccgtt
aacccgcaggttaacccggatatcgtcgctatgatcggtgcttccgctgcgctgagcctg
tccggcattccgtttaacggcccgattggcgcggctcgcgttggttacatcaacgaccag
tatgtgctgaacccgactaccgaagagctgaaaaccagccgtctggatctggtggttgcc
ggtaccgaaggcgcagtgctgatggttgaatccgaagcggatctgctgagtgaagatcag
atgctgggcgcggtagtgttcggtcacgatcagcagcagattgttatcgaaaacattaaa
tcgctgacggcggaagccggcaagccgaagtggaactggcaggcgccggaagttaatgtt
gaactgcacaaccgtgtgcaggcgctgtctgaagcccgtctgggcgatgcctatcgcatc
accgagaaacaggagcgttacgctcaggttgataccatcaaatccgacgtggttgcggct
ttgctggcggaagatgacacgctggacgaaaacgagctgcgcgatattctcggcagcatc
gagaagaatgtggtgcgtagccgtgtactgcgcggcgaaccgcgtatcgacggtcgtgaa
aaagacatgatccgtggtctggacgttcgtaccggcgtactgccgcgtactcacggttcc
gctctgttcacccgtggtgaaactcaggcgctggttaccgcgacgctgggtaccgagcgc
gacgcgcagattattgacgaactgatcggcgaacgtaccgatcgtttcctgctgcactac
aacttcccgccgtactccgtgggtgaaaccggtatggtcggttcgccgaaacgccgcgaa
atcggtcacggtcgtctggctaaacgtggtgtgctggcggtgatgccgaaaccggaagcc
ttcccgtacaccgtgcgtgtggtatccgaaatcactgagtccaacggttcttcttctatg
gcgtccgtgtgcggcgcgtcgctagcgctgatggatgccggtgtgccgatcaaggctgcc
gttgccggtatcgcgatgggtctggtgaaggaaggcgacaacttcgtggttctgtctgac
attctgggtgacgaagaccacctgggcgacatggacttcaaagtggctggtagccgtgaa
ggcgtgaccgcgctgcagatggacatcaaaatcgaaggcatcacccgcgaaatcatgcag
gtggcgttgaatcaggccaagggtgcgcgtctgcacattctgggcgtgatggaacaggcc
attagctcgccgcgtggcgatatctctgaattcgcaccgcgtattcacaccatcaagatc
agcaccgacaagatcaaagatgtgattggtaaaggtggttcggtgatccgcgcgttgacc
gaagaaaccggtactaccatcgagatcgaagatgacggcacggtgaaaatcgcatcgacc
gacggcgaaaaagcgaaacatgccattcgtcgtatcgaagagatcacggctgaaatcgaa
gtgggccgtatctatcagggtaaagtgacccgtatcgttgactttggcgcctttgtcgcc
atcggcggcggtaaagaaggtctggtgcatatttctcagatcgccgacaagcgtgttgag
aaagtgaccgactatctgcagatgggccaggaagtaccggtcaaggtactggaagtggac
cgtcagggtcgtatccgtttgagcataaaagaagcaaatgctcaatctcaggaaactgtt
caggtttccgaggaagaataa
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