Dickeya fangzhongdai ND14b: LH89_09260
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Entry
LH89_09260 CDS
T03347
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LH89_09260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ced03021
]
LH89_09260
Transcription machinery [BR:
ced03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LH89_09260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DUF2610
HAP1_N
HTH_SUN2
DNA_ligase_A_N
WH_Rok
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AIR69379
LinkDB
All DBs
Position
2130033..2131868
Genome browser
AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITGFVDPNAEEDLAPNTTP
ENAELADDGMDDDDDENEEDEDDSDDDNSIDPELARQKFTELRDQYEATRVSIKAHGRSH
PTAIDEINKLSEVFKQFRLVPKQFDLLVNNMRTMMDRVRTQERQIMKLCVELCKMPKKNF
VTLFTGNETNSKWFDAALSMGKPWCEKLREVEDDVHRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgccgaggtcaatgaccatctgccggaagatatcatcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcgccg
gatgccgatgatctgatgctggccgagaataccgccgatgaagacgctgccgaagcagcg
gcgcaggtattgtccagcgttgaatctgagattggccgcacgaccgatccggttcgcatg
tacatgcgtgagatgggtaccgtcgaactgctgacccgtgaaggggaaatcgatatcgcc
aagcgaatcgaagacggtatcaatcaggttcagtgctccgttgccgagtatccggaagcc
atcacctatctgttggatcaatacgaccgcgtcgaagcgggagaaagccgcctgtccgat
ctgatcaccggctttgttgatccgaacgccgaagaagacctggcgccgaataccacgccc
gagaacgccgaactggccgacgacggcatggatgatgacgacgacgaaaacgaagaagac
gaagacgactccgacgatgacaacagcatcgacccggagctggcgcgtcagaaattcacc
gagctgcgcgatcagtatgaagcgacccgcgtaagcatcaaagcgcatggccgcagccac
ccgaccgctattgatgaaatcaataagctgtctgaagtgttcaagcagttccgtctggtg
ccgaagcagttcgacctgctggtgaacaacatgcgcaccatgatggaccgcgtgcgcacg
caggaacgccagatcatgaaactgtgcgtcgagctgtgcaaaatgccgaagaaaaacttc
gtaacgctgttcaccggcaatgaaactaacagcaagtggttcgacgccgcgctttccatg
ggcaaaccctggtgcgaaaaattgcgcgaagtggaagacgacgtgcatcgcagcctgcag
aaactgcaacagatcgaagaagaaaccggcctgaccatcgagcaggtgaaagacatcaac
cgtcgcatgtcgattggtgaagccaaggcgcgtcgcgccaagaaagagatggtggaagcc
aacctgcgtctggttatctcgatcgccaagaaatacaccaaccgcggcctgcaattcctg
gacctgattcaggaaggcaacattggcctgatgaaagcggtagacaaattcgaataccgc
cgcggctacaagttctccacctacgccacctggtggatccgtcaggcgatcacccgctcc
atcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatcaacaaa
ctcaatcgtatttcccgccagatgctgcaggaaatgggccgtgagccgacaccggaagaa
ctggccgagcgtatgttgatgccggaagacaagatccgcaaggtattgaagatcgccaaa
gagccgatctccatggaaaccccgatcggtgatgacgaagattcgcatctgggggacttc
atcgaagataccacgctggaactgccgctggattccgcgacgtcggaaagcctgcgctcc
gccacccacgacgtgctggccggcctgaccgcccgcgaagccaaagtgctgcgtatgcgt
ttcggtatcgacatgaataccgaccacacgctggaagaagtcggcaaacagttcgacgta
acccgcgagcgtattcgtcagatcgaagcgaaagcgctgcgtaaactgcgtcacccgagc
cgctccgaagtactgcgtagcttcctggacgattaa
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