Dickeya fangzhongdai ND14b: LH89_10790
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Entry
LH89_10790 CDS
T03347
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_10790
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LH89_10790
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Cyt_bd_oxida_II
Motif
Other DBs
NCBI-ProteinID:
AIR69673
LinkDB
All DBs
Position
complement(2461146..2463092)
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AA seq
648 aa
AA seq
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MGLTARISILMTMLTTLAIVLMLASSIFSFVCYSQQRMEHQLRAVAASIDQALLVQPPGS
IQFWLPAVMKAAGIVELEIRDGHESLYLLRLPEMLSDGEDRALLYRHTRLSLLHHTDVRV
NVTYVDPLFGTPRYLKSSLSIVLMILVIAVVVFHGVRWLRRQMAGQEQLEKRARRILAGE
RDTVMHGSVHEWPATASGALDQLLLDLAEAREARSRVDTLIRSFAAQDAQTGLNNRLFFE
NQLATQLEDPEDVGTHGVVMMIRLPDFDTLQETHGYGGVLEEYRNTLINLLSTFVLRYPS
ALLARYYHSDFTVLLPHRTLKEADSIASQLVKAIDILPVTPLIDREDILHIGISAYHGGQ
TTEQVMESVEDATRNAVLQGGNGWCVYDRRVPEKGRGSVKWRTLLEHTLLRGGPRLYQKP
AITRDGEVHHREMFSRIYDGTQELLEAEYMPLVRQLGLTSGYDRQLINRVIALTVSWQDS
VLALPITVDSLLQRPFLRWLRETLLQCPKRQRERLLFELAEADVCQYIGRLRPILAMITG
LGCRLAVTQAGLTLVSTAYIKSLRVEVIKLHPGLVRSLDKRPENQLFVSSLTEACKGTHA
QVFAAGVRTREEWQTLLDKGVCGGQGDLFAASEPVGNTLKKYSPRTYV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggggttgactgccagaatatcgatattgatgacgatgctaacgacattggccatagtg
ctcatgttggccagcagcatttttagttttgtgtgttatagccagcaacgaatggagcac
cagctcagggcggtggcggcgagtattgatcaggcgctgctggtgcagccgcccggcagt
atccagttctggttgccggcggtgatgaaagcggccggcatcgtggagctggagattcgc
gacggtcacgaaagcctctatttattacgtttgccggaaatgttgtctgacggcgaggat
cgggcgctgctctatcgtcatacccgtttatcgctgctgcaccatactgacgtgcgggta
aacgtaacctacgtcgacccgttgttcgggacgccccgctatctcaaatcctcgttatct
atcgtgctgatgattttagtgattgcggtggtcgtatttcatggcgtgcgctggctgcga
cgtcaaatggccggtcaggaacagctggagaagcgcgcccgacgcattctggcgggcgag
cgcgataccgtgatgcacggttcggtacacgaatggccggcgacggccagcggcgcgctg
gaccagttgctgctggatttggcggaggcgcgcgaagcgcgcagtcgggtggatacgctg
atccgctcgtttgcggcgcaggatgcgcaaaccggcctgaataaccggctgttttttgaa
aatcagctcgccacgcaactggaagatccggaagacgtcggcacgcacggcgtggtgatg
atgatccgcctgccggattttgacaccctgcaggaaacgcacggctacggcggcgtgctc
gaagagtatcgcaataccctgatcaacctgctgtccacgtttgtcttacgctatccctcc
gcgctgctggcgcgttactaccacagcgattttacggtgctgctgccgcaccgcaccctg
aaagaagcggacagcatcgccagccaactggtgaaagcgatcgatattctgccggttacg
ccgttgatcgatcgggaagacattttgcacatcggcatcagcgcctatcacggcggacag
accaccgaacaggtgatggaaagcgtggaagatgccactcgcaacgccgtattgcagggc
ggcaacggctggtgcgtttatgaccggcgggtgccggaaaaaggccgcggcagcgtgaag
tggcgcacgctgctggaacatactctgctgcgcggcgggccgcgtttgtatcagaagccg
gcgattacccgcgacggcgaggtgcatcaccgggaaatgtttagccgaatttatgatggc
acccaggaattgctggaggcggagtacatgccgctggtgcgtcagctcggcctgacctcc
ggttatgaccggcagttgatcaaccgggtgattgccctgacggtcagttggcaggattcg
gtgctggctttaccgattacggtggattcgctgttacagcggccgttcctgcgctggctg
cgcgaaaccctgctccagtgtccgaaaaggcagcgtgagcgattattgtttgaacttgct
gaagcggatgtgtgtcaatatatcggccgtttgcgaccgatacttgccatgatcaccggt
ctgggctgccggctggcggtgacgcaggccgggctgacgctggtcagcaccgcctatatc
aagtcgctgcgggtggaggtgatcaagctgcacccggggctggtgcgcagcctggataag
cgaccggagaaccagctgttcgtcagtagtctgaccgaagcctgtaaggggacgcacgcc
caggtgttcgccgccggcgtgcgtacgcgcgaagagtggcagacgttgctggataaaggc
gtttgcggcggtcagggcgatctgttcgccgcttccgagcctgtcggcaacacgctgaaa
aaatattcaccgcgcacgtatgtttga
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