Dickeya fangzhongdai ND14b: LH89_12745
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Entry
LH89_12745 CDS
T03347
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03030
DNA replication
ced03410
Base excision repair
ced03420
Nucleotide excision repair
ced03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH89_12745
03410 Base excision repair
LH89_12745
03420 Nucleotide excision repair
LH89_12745
03440 Homologous recombination
LH89_12745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ced03032
]
LH89_12745
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_12745
Enzymes [BR:
ced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LH89_12745
DNA replication proteins [BR:
ced03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH89_12745
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LH89_12745
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH89_12745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Prok-E2_E
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AIR70030
LinkDB
All DBs
Position
2887109..2890114
Genome browser
AA seq
1001 aa
AA seq
DB search
MVQIADNPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLLQQYHPSHVAV
VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSISGVEADDVIGT
LAQQAERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAELDKIAGLTFRGAKTMAAKLEQNK
EVAYLSYQLATIKTDVELEQGCEQLTVNEPDVAELRELFTRYEFKRWLADVEAGQWLQGG
NKKSSPAMPFVKATVEDGPKEAASVLSQDGYVTILDEQTFQDWIARIKAAGLFSFDTETD
GLDTLTTNLVGISLAIKPGEAAYLPLGHDDLNGEYAREAPPSGIAQRIYSCNVYNSTVSP
AMSAPSTQTEEALPSGIVQRIYSCNVYNSTVSPAMSAPNTCAENAPVQLNLDWVLAQLKP
LLEDDSIRKIGQNLKFDKGVMARYGIDLRGIAFDTMLESYVIDSVAGRHDMDSLSERYLQ
HKTITFEEIAGKGKKQLTFNQIPLEQASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQ
NIDMPLVPVLSRMERTGVLIDTTILAEHSRELTQRLAELEVQAHELAGEVFNLSSTKQLG
AILYEKQQLPVIKKTPKGAPSTNEEVLAELALNYPLPKLILEYRGLAKLKSTYTDKLPQM
INPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAQEGYCILAADYS
QIELRIMAHLSRDAGLLRAFSQGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYG
MSAFGLSRQLAIPRNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPD
IHSRNANSRKAAERAAINAPMQGTAADIIKKAMIAIDAWLQQEKPLVTMLMQVHDELVFE
VHHSVLDEASAKIRSLMEGCMQLDVPLRVDIGTGSNWDQAH
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggttcaaatagcagataatcccctcattctggttgacggttcatcgtacctttaccgc
gcctatcatgcctttcccccactgaccaacggtgccggcgaaccgaccggcgcgatgtat
ggcgtgctcaacatgttgcgcagtttgctgcagcaataccatcccagtcatgtcgcggtg
gtgtttgacgcgaagggtaagacgtttcgtgatgatttgtttgaacactacaaatctcac
cggccgccgatgccggatgatctgcgcgctcagattgaaccgttgcaccgcatggtaaaa
gcgatgggattgccgttgctctccatttccggcgtagaggcggatgatgtgattggaacg
ttggcgcagcaggcggaacgtgcgggtaaacctgttctgattagcaccggcgataaggat
atggcgcaactggtgacgccgaatatcacgctgatcaacaccatgaacaacaccattctg
gggccggatgaggtatgcgccaaatacggtattccgccgtcgctgatcattgattttctg
gctctgatgggggattcctccgacaacattcctggtgtgccgggcgtgggtgaaaaaacc
gcacaggcattactgcaggggctgggggggctggataccctgtatgccgagctggataaa
attgccggcctgaccttccggggcgccaaaaccatggcagccaagctggagcagaataaa
gaggtagcttacctttcctatcagctggctacgatcaagacggatgttgaactggagcag
gggtgtgaacaactgacggtgaatgagccggatgtggcggaactgcgcgaactgttcacc
cgttatgagttcaaacgctggctggcggatgtggaagccgggcagtggttgcaaggcggc
aacaaaaagagttcgccggccatgccattcgtcaaggcgacggtggaggacgggccgaaa
gaagcggccagcgtgctgtctcaggacggctatgtcaccattctggatgaacagacattt
caggactggattgcacgaattaaagctgctggtctgttctcgttcgacaccgaaaccgat
ggtcttgataccctcaccactaatctggttgggatttcactggcgatcaagccgggtgag
gcggcttacctgccattaggccatgatgatttgaatggtgagtacgcgagagaagccccc
ccgagcggaattgcacagcggatatactcctgcaacgtttataacagtactgtatcacct
gcgatgagcgcaccgagtacgcagacggaggaggctctcccaagcgggattgtacagcgg
atatactcctgcaacgtctataacagtactgtatcgcctgcgatgagcgcaccgaacaca
tgcgctgaaaatgcacctgtacaactgaatctcgattgggtgctggcgcaactgaaaccg
ctgctggaagatgacagcattcgcaagatcgggcaaaacctgaaatttgataaaggcgtg
atggcccgttacggcatcgatctgcgcggcattgccttcgataccatgctggaatcctat
gtgattgacagtgtggctggacgccatgacatggacagcctgtcagagcgctatttgcag
cataaaaccattacatttgaagagattgccggtaagggtaaaaaacagctgacgttcaat
cagattccactggagcaggcatctgtctacgcggctgaagatgccgatgtgacgctgcgt
ttgcatgagacgttatgggcgaaactggagccgcagcaggaactgcgcaaggtgttccag
aatatcgatatgccgttggtgccggtgttgtcgcgcatggagcgcaccggggtgctgatc
gataccactattctggcggagcattcgcgggagctgacgcaacgtctggcagagttggaa
gtgcaggcgcatgaactggcgggggaagtcttcaatttgtcttccaccaaacagttaggg
gccattctgtacgaaaaacagcagttgccggttatcaagaaaaccccgaagggcgcgcct
tccaccaatgaagaagtgctggccgaactggcgctgaattatccgctgccgaagttgatt
ctggagtatcgcggactggcgaaactgaaatccacttacacagacaaactgccgcagatg
atcaatccgctgaccaagcgggtgcacacctcttaccatcaggcggtaacggcaaccggg
cgcctttcctccagcgatcccaatctgcagaacattccggtacgtaatgaagaagggcgg
cgtatccgtcaggcgtttattgcgcaggaaggatactgcattctggcggcggactactcg
cagattgaattacgcatcatggcgcatctgtcacgggacgccggattgctgagggcgttt
tctcaaggtctggatattcaccgcgccacggccgccgaggtattcggtctgccgctcgac
agggtgaccaccgaacagcgccgtagcgccaaagccatcaactttggtttgatttatggc
atgagcgcatttggcttgtcccgtcagctggctattccgcgtaacgaagctcaaaaatat
atgaatctctattttgagcgttacccgggcgtgcaggagtatatggagcgcactcgccag
caggcggcggatcaaggatatgtatccacgctggatggccgtcgtctctatttgccggat
attcattcccgcaacgccaatagccgcaaggcggcggagcgggcggctattaacgcgccg
atgcaaggcaccgcggcggatatcatcaaaaaagcgatgatcgccattgatgcctggctg
caacaggaaaaaccgttggtgacgatgctgatgcaggtacacgatgaactggtgtttgaa
gtgcatcactccgtattggacgaagccagcgcgaaaatacgcagtctgatggaaggctgc
atgcagctggacgtgcccttacgggtggatatcggcaccggcagcaactgggatcaggcc
cattaa
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