Dickeya fangzhongdai ND14b: LH89_13845
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Entry
LH89_13845 CDS
T03347
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH89_13845 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ced03021
]
LH89_13845 (rho)
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_13845 (rho)
Transcription machinery [BR:
ced03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LH89_13845 (rho)
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LH89_13845 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIR70230
UniProt:
A0A2K8QRY7
LinkDB
All DBs
Position
3136824..3138083
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccagtgtctgagttaattactcttggcgaaaat
atggggctagagaatctggctcgcatgcgtaaacaggatattattttcgctatcctcaag
cagcacgcgaaaagtggtgaagacatctttggcgatggcgtgctggaaatattgcaggat
ggttttggtttcctccgctccgcagacagctcctacctcgccggccctgatgacatctac
gtttctcccagccaaatccgacgcttcaacctccgcactggcgacaccatttccggtaag
attcgtccgccgaaagaaggtgaacgctatttcgcgctgctgaaggtcaacgaagtcaac
tacgacaagccggaaaacgcccgcagcaaaatcctgtttgaaaacctgacgccgctgcac
gctaattcgcgtctgcgtatggaacgcggcaacggttccaccgaagacctgacggctcgc
gtactggatctggcctcgccgatcggtcgtggtcagcgtggcttgatcgtggcgccgccg
aaagccggtaagaccatgctgctgcagaacatcgcccagagcatcgcttacaaccatcct
gactgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgacggaaatgcag
cgtctggtgaaaggggaagtggtggcgtcgaccttcgacgaaccggcctcccgtcacgtt
caggtcgccgaaatggtgatcgagaaagccaagcgcctggtcgagcacaagaaagacgtg
attatcctgctggattccatcacccgtctggcgcgtgcttacaacaccgtggtgccggcc
tccggcaaggtgctgaccggtggtgtcgacgccaacgccctgcaccgtccgaaacgcttc
ttcggcgcggcccgtaacgttgaggaaggcggcagcctgacgatcatcgccacggccttg
atcgataccggttcgaagatggacgaagtgatttacgaagagttcaagggcaccggcaac
atggaactgcacctgtctcgtaagattgccgagaagcgcgtgttcccggccatcgactac
aaccgctccggtacccgtaaggaagagctgttgaccacctccgaggaactgcagaaaatg
tggatcctgcgcaagatcatccacccaatgggcgagatcgatgcgatggagttcctgatc
aacaagctggcgatgaccaaaaccaacgacgaattcttcgatatgatgaaacggtcgtaa
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