Dickeya fangzhongdai ND14b: LH89_14425
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Entry
LH89_14425 CDS
T03347
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced00040
Pentose and glucuronate interconversions
ced01100
Metabolic pathways
ced02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LH89_14425
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LH89_14425
Enzymes [BR:
ced01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LH89_14425
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AIR70340
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Position
complement(3268794..3269918)
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AA seq
374 aa
AA seq
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MKSFIAPIAAGLLLAFSQSSLAATGGYATTSGGNVTGAVSKTAASMQDIIDIIDAAKLDS
KGKKVKGGAYPLIITYTGNEDSLINAAAANICGQWSKDARGVEIKDFTKGITIIGANGSS
ANFGLWIVNSSDVVVRNMRIGYLPGGAQDGDMFRIDNSPNVWLDHNELFAANHECDGTKD
GDTTFESAFDIKKGATYVTISYNYIHGVKKVGLAGFSATDSAERNITYHHNIYNDVNARL
PLQRGGNVHAYNNLYTNITSSGLNVRQNGKALVESNWFENAVNPVTSRYDGSNFGTWVLK
NNNITKPADFATYNITWTADTKAYKNADSWTSTGTYPTVTYSYSPVSAQCVKDKLANYAG
VGKNLAELTSSACK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattcattgccccgattgccgccggtctgctgctggcctttagtcaatccagt
ctggctgcgacgggcggttatgccaccacttccgggggcaacgtgacgggagccgtcagc
aaaaccgcagcctccatgcaggacatcatcgatatcatcgatgccgctaaactcgactcc
aaaggcaaaaaggtgaaaggcggcgcgtacccgctgatcatcacctataccggtaacgaa
gattcgctgatcaacgccgctgccgccaatatttgcggccagtggagcaaagacgcccgc
ggtgtggaaatcaaagacttcaccaaaggcatcaccatcatcggcgccaacggttcttcc
gccaacttcggtctctggatcgtgaactcctccgacgtagtcgtacgtaacatgcgtatc
ggctacctgccgggcggcgctcaggatggcgatatgttccgtatcgacaactcgccgaac
gtctggctggaccacaacgaactgtttgccgccaaccatgagtgtgatggcaccaaagac
ggcgacaccacgttcgaatccgcctttgacatcaagaagggcgccacttacgtcaccatt
tcctacaactacatccacggcgtgaagaaagtcggcctggctggtttcagcgccactgac
agcgctgaacgcaacatcacttaccaccacaacatctacaatgacgtcaacgcccgtctg
ccgttgcagcgcggcggcaacgtacacgcctacaacaacctgtacaccaacatcaccagc
tctggtctgaacgtgcgtcagaacggcaaggcgttggtcgaaagcaactggttcgaaaac
gcagtgaacccggtgacgtcccgttacgacggcagcaatttcggcacctgggtgctgaaa
aacaacaacatcaccaaaccggctgatttcgctacctacaacatcacctggacggcggat
accaaagcttataaaaacgcggacagctggacctccaccggcacttacccgactgtgacc
tacagctacagcccggtcagcgcacagtgcgtgaaggacaaactggctaactacgccggt
gtcggtaaaaacctggccgagctgaccagctcagcttgtaaataa
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