Dickeya fangzhongdai ND14b: LH89_14780
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Entry
LH89_14780 CDS
T03347
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LH89_14780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ced03021
]
LH89_14780
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_14780
Enzymes [BR:
ced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LH89_14780
Transcription machinery [BR:
ced03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LH89_14780
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LH89_14780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AIR70409
UniProt:
A0A2K8QRM0
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All DBs
Position
3326506..3327495
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASINMRIKVQRGRGYVPASARIHTEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccgttagagcggggcttcggccatactcttggt
aacgcactgcgccgtattctgctttcatccatgcctggttgcgcggtgaccgaggttgag
attgatggtgtactgcacgagtacagcaccaaagaaggcgtacaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcaaggcaaagatgaagttattctt
accctgaataaatctggcattggccctgtgactgcagccgacatcacccacgacggtgat
gtcgaaatcgtcaagccacagcatgtgatctgccatctgaccgatgagaacgcatctatc
aatatgcgtatcaaagttcagcgtggtcgtggttatgtgccggcgtctgcccgtattcat
acggaagaagatgagcgcccgatcggtcgcctgttagtcgacgcttgctacagccctgtt
gagcgtatcgcttacaatgttgaagcagctcgtgttgaacagcgtaccgacctggacaag
ctggttatcgagatggaaaccaatggcacgattgatcctgaagaggcgatccgccgtgcg
gcgaccattctggctgaacaattggaagctttcgttgacttgcgtgatgtacgtcagccg
gaagtgaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctt
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgaactgcttaaaacgcctaacctgggtaaaaaatctctt
actgagattaaagacgtgctggcttctcgtggtctgtctctgggcatgcgcctggaaaac
tggccgccggcaagcattgctgatgagtaa
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