Dickeya fangzhongdai ND14b: LH89_15270
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Entry
LH89_15270 CDS
T03347
Name
(GenBank) hypothetical protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LH89_15270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ced03000
]
LH89_15270
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_15270
Enzymes [BR:
ced01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LH89_15270
Transcription factors [BR:
ced03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LH89_15270
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LH89_15270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
AIR70493
LinkDB
All DBs
Position
complement(3429772..3431136)
Genome browser
AA seq
454 aa
AA seq
DB search
MNDTVLTTWQQARISRDPRFDGTFFVAVKSTGIFCRPICPAPLPLEKNVVYYRTRTEAIQ
AGFRPCLRCKPEYAPRFAELDRKQQLPVRIAAAIDSGEHLLSKVEQIAAAHHLSSRYLNR
LFREHYGCSVKEYQNIAKIFFAKKLFQSSSLSITDIAASCGFNGLSGFYQLIDKYLKTTP
KRMMLSPSGSRDKAEHIRLRLPVGGRYHWDYFLAFQSRRLIDGVEWIDGETYGRCFILNG
EKGSFQIRPATGGFDVTIALSRLTLLSQVLERIRNMFDLNVNIDAIEDQLHQAYPTLPIA
SGIRIPGVFSPFEAAIRAVCGQQVSVGAATTLLNQLVSLCAIEEDGQRYFPTPDRITPEI
VEPLRSMRSKKTTLVNVADWFCRHDISDIEQLTEVKGIGRWTLDYLKLRSLNDPDIWLGG
DLGIRNALRQLGEIDPQRAAPWQSYLTLHLWNTL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataccgtgctgaccacatggcaacaggcgagaatcagccgcgatccgcgtttt
gacggcacctttttcgtcgccgtcaaatccaccggtatcttctgccgccccatctgcccg
gcgccgttgccgctggagaaaaacgtcgtttactaccgcacccgcaccgaggcgattcag
gccggttttcgcccctgcctgcgctgcaagccggaatacgcgccgcgtttcgccgaactg
gaccgcaagcaacaactaccggtgcgcatcgccgccgccatcgacagcggcgaacatctg
ctgtcgaaggtggagcagattgccgcggcccaccatctctccagtcgctacctgaaccgg
ctgttccgcgagcattacggctgttcggtgaaggaataccagaacatcgccaagattttt
ttcgccaagaagctgttccagagttccagcctcagcatcaccgacatcgccgcctcgtgc
gggtttaacggcctgagcgggttttatcagcttatcgacaagtacctgaaaaccacgccc
aaacggatgatgttgtcgccatcgggcagccgggataaggcggaacacatcaggctgcgc
ctcccggtcggcggccgctaccattgggattattttctggcttttcagtcccggcgattg
atcgacggcgtggaatggatcgacggcgagacttacggccgctgctttatcctcaacggc
gagaagggatcgtttcagatacgtccggcgaccggcgggtttgacgtgacgatcgcgcta
agccgcctgacgctgttgtctcaggtgctggagcggatccgcaacatgttcgatcttaac
gtcaatatcgacgcgatcgaggatcagttgcatcaggcttatccgacattgccgatcgcc
tccggcatccgcattcccggcgtgttctcgccgtttgaagccgccatccgcgccgtttgc
ggtcaacaggtgagcgtcggtgccgctaccacgctgctaaaccaactggtgtcgctctgc
gccatcgaggaagacggccagcgttacttcccaacgccggaccgcatcaccccagaaatt
gttgagccactgcgcagcatgcgatcgaaaaaaaccacgctggtgaatgtcgctgactgg
ttctgccgccacgacatcagcgacatcgagcaactcaccgaggtgaaaggcatcggtcgc
tggacgctcgattatctgaaactgcgatcgctcaacgatcccgatatctggctgggcggc
gatctgggtatccgcaacgccttgcgtcagttgggagagatcgacccgcagcgcgcggcg
ccgtggcagagctacctgacccttcatctgtggaacacgctgtaa
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